Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05417 ATGCAGACATCCTACAACGAGCCACGCCTTCTCATTCCAACTGATCCAAGAACAGATCATCAGCCCATTAAGGACGGAGCTCTTGGAAATATATCAACTATTGCTTTTTGTGACACTGATTCTCCAATGCAGTATGTTGATGTTGGGATTCCTTCTAATAACAATGGAACACATAGCATTGGTTGTCTCTTTTGGCTATTAGCAAGGATGGTACTGCAGATGCGGTGTAACATCCCAAAAACTTAG 246 0.4187 MQTSYNEPRLLIPTDPRTDHQPIKDGALGNISTIAFCDTDSPMQYVDVGIPSNNNGTHSIGCLFWLLARMVLQMRCNIPKT. 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05417 81 PANTHER 40S RIBOSOMAL PROTEIN SA 1 80 IPR005707 GO:0003735|GO:0006412|GO:0015935
Seca3g05417 81 Gene3D - 1 81 - -
Seca3g05417 81 PRINTS Ribosomal protein S2 signature 8 25 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g05417 81 PRINTS Ribosomal protein S2 signature 46 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g05417 81 PRINTS Ribosomal protein S2 signature 25 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g05417 81 SUPERFAMILY Ribosomal protein S2 2 76 IPR023591 -
Seca3g05417 81 MobiDBLite consensus disorder prediction 1 24 - -
Seca3g05417 81 Pfam Ribosomal protein S2 4 71 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05417 Seca-Chr3 108183550 108183974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05417 1 78 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 83.333 5.46e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05417 K02998 - csin:114279009 144.436