LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g05405	ATGGCTGCAGCTAAGAACAGTGGCAAATTCAGCAAGGATGTGAGTGGTGATGACACTCCCAATCACAATCACAAGGTTAGCCTTACCCATATGGGTGAAAGCCAAGATTGGGAGATTGAGAAAAAGGGAAAGGGTTTAGATTTAACCTCTCAGAGTCAGAGTCAGAGGCGTCCATGGAAGCCAGTTTTTGATGAAGCTTCCATGTCACAACATGATAGGCCTTTGAAGAAGATTCGTAGCCCTGAACGTCAAAACCCAAATCAACATTCTCCCTCCTCTGTTCCTCCTTCTTCATCATCCTCTTCAAGACTCATCTTTCCTTTTGCTTTTGATGGTTCCCAACACCCCATTCATTTCCCACACCAATTTGGAACCACAAATTTGCCTCTTTTCCGTCCACCCATTCAAACAACACAGCAACAACAACAAATGATATCTTTTGGGTCACAACAACAACAGCAACAACAGAACTTAGCATATCCACCAATCTTACAACAGCAACAACATCACCAGCAGCTTCTTCAGTATTGGAGTGATGCATTGAATCTAAGTCCAAGAGGAAGGATGATGATGATGATGAACAACAACAACAGGTTAGGGCCACATGGTAGCACATTGTTTAGACCTCAAGTTCAACCCATAAACACTACCAAACTCTACAGGGGTGTGAGACAACGCCATTGGGGAAAATGGGTAGCTGAAATTCGTCTCCCTCGAAACAGGACACGTCTCTGGCTTGGCACATTTGACACAGCAGAAGATGCTGCTATGGCCTATGACCGTGAAGCCTTCAAGTTAAGAGGAGAAAATGCAAGGCTCAATTTCCCTGAACTCTTTCTCAACAAGGACAAAACACAAGAACCTTCTTCACCAGCTCCAACAACAACAACTACTTCATCTGCTTCTGTTTCTGTTTCTTCTCCTTCTAGTCATAGCAACACAAAGCAGCCTGAACCTGTTTCTTCTAATGTGCATCCACTGCCAAAAGAAGAGTCAAATGAGAATGACTCTGGAATTGGATCAAGTGATGCTACAGTGAGTGAAGCAGGGGAAGGAGTTTCACAGTCACAAGAATTGGTTTGGGGTGAAATGTCAGCATGGTTCAATGCTATTCCAGCTGGTTGGGGTCCAGGTAGTCCTGTGTGGGATGATTTAGACACCAACAATGATCTTTTTCTACACTCACACCTTCCTTTTGCCAATCCCAATCAACAAGAAAATCAACAAGGGTTCAATGATGTTGATCCTCAGAGACATGAACATAATAACATGGGACCAGGTTCTTCCATGAGGCCCTTCTTTTGGAAAGATCAAGATTGA	1320	0.4364	MAAAKNSGKFSKDVSGDDTPNHNHKVSLTHMGESQDWEIEKKGKGLDLTSQSQSQRRPWKPVFDEASMSQHDRPLKKIRSPERQNPNQHSPSSVPPSSSSSSRLIFPFAFDGSQHPIHFPHQFGTTNLPLFRPPIQTTQQQQQMISFGSQQQQQQQNLAYPPILQQQQHHQQLLQYWSDALNLSPRGRMMMMMNNNNRLGPHGSTLFRPQVQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKDKTQEPSSPAPTTTTTSSASVSVSSPSSHSNTKQPEPVSSNVHPLPKEESNENDSGIGSSDATVSEAGEGVSQSQELVWGEMSAWFNAIPAGWGPGSPVWDDLDTNNDLFLHSHLPFANPNQQENQQGFNDVDPQRHEHNNMGPGSSMRPFFWKDQD.	440

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g05405	439	MobiDBLite	consensus disorder prediction	1	101	-	-
	Seca3g05405	439	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	41	385	-	-
	Seca3g05405	439	FunFam	Ethylene-responsive transcription factor 2	218	277	-	-
	Seca3g05405	439	SUPERFAMILY	DNA-binding domain	219	277	IPR016177	GO:0003677
	Seca3g05405	439	CDD	AP2	218	278	IPR001471	GO:0003700\|GO:0006355
	Seca3g05405	439	Gene3D	AP2/ERF domain	219	277	IPR036955	GO:0003700\|GO:0006355
	Seca3g05405	439	ProSiteProfiles	AP2/ERF domain profile.	219	276	IPR001471	GO:0003700\|GO:0006355
	Seca3g05405	439	MobiDBLite	consensus disorder prediction	66	83	-	-
	Seca3g05405	439	MobiDBLite	consensus disorder prediction	11	45	-	-
	Seca3g05405	439	MobiDBLite	consensus disorder prediction	334	356	-	-
	Seca3g05405	439	SMART	rav1_2	219	282	IPR001471	GO:0003700\|GO:0006355
	Seca3g05405	439	MobiDBLite	consensus disorder prediction	84	101	-	-
	Seca3g05405	439	MobiDBLite	consensus disorder prediction	283	321	-	-
	Seca3g05405	439	Pfam	AP2 domain	220	268	IPR001471	GO:0003700\|GO:0006355
	Seca3g05405	439	PRINTS	Ethylene responsive element binding protein signature	242	258	IPR001471	GO:0003700\|GO:0006355
	Seca3g05405	439	PRINTS	Ethylene responsive element binding protein signature	220	231	IPR001471	GO:0003700\|GO:0006355
	Seca3g05405	439	MobiDBLite	consensus disorder prediction	280	356	-	-
	Seca3g05405	439	MobiDBLite	consensus disorder prediction	401	439	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g05405	Seca-Chr3	108023154	108024548	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g05405	1	401	AP2-EREBP Transcription Factor Family	AT2G20880	41.769	6.61e-63	205

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Seca3g05405		AP2	2.9e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g05405	-		-	psat:127086869	459.144