Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05394 ATGGGGTGTTGTGTCTCAACAAGCAGTAGAAGTACTTGTAGTAGCAAGAGCTATGGAGACACGGTCTCTCCATCTTGTCTAGAAATGGGATTCTGTGGTCAAAAGAGAACAAGGAGAACATTCTCTGATCATGTTGTCTCTTTGCACAAGCTACCATCCTTACCAAACAGAATTTTCACTAATGGAAAGAGCCGGTCTTCTTGCATATTCACACAGCAGGGTCGTAAGGGTATTAATCAGGATGCCATGATTGTATGGGAAGATTTCATGTCAGAAGATGTGATCTTTTGTGGTGTCTTTGATGGCCATGGTCCACATGGTCACCTTGTTGCGCGCAAAGTCAGGGATGCGTTGCCAATAAAACTGCTTTCATGTTTGCATTCCTGTGAATTGAGGCAAAATGGTTCAGGTAAAGCTTGTTTTAAGGGTGACATAAAGCCTGAAAGTGGAGAGTCTGAGAAGGATTTCTCTGCTGAGGATACACTGAATTCTATGTGGAGAGATGCTTTCATGAAGGCATACAAGGCTATGGACAAAGATCTGAGGTCTCATCCAAATTTGGACTGCTTCTGTAGTGGGAGCACAGCTGTTACTATAGTGAAACAGGGTTCAAATTTGTTTATGGGCTATATTGGGGATTCTCGAGCAATCATGGGATCCAAGGACAATAATGACTTGATGGTGGCAATTCAGTTGACTGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCTGAAAGAATTAAACGATGCAAGGGTAGAGTATTTGCATTGCAAGATGAGCCAGAAGTTCCTAGGGTGTGGTTACCTTTTGATGATGCACCTGGATTAGCAATGGCTAGAGCATTTGGAGATTTTTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTTCTCATCAGTTGCTTACAGACAGAGATCAATTCATTGTTCTTGCCTCAGATGGGGTAAGATATTTCAATCTTGTATCTATTGTCTGGGATGTTTTGAGCAATGAAGAGGTGGTTGAGATAGTATCTTCAGCACCAAGTCGATCATCAGCAGCAAGGGTTCTGGTAGATTCTGCTGCTAGAGAGTGGAAACTCAAATATCCAACTTCAAAAATGGATGACTGTGCTGTTGTGTGCCTATTTTTGGATGGGAAAATGGACCCAGAATCTGATTGTGATGAGCCATGTTTTTCCTCTGCAACCATCCAGAGCAACCATTCAGGTAATCCAGTTGAGTCAGATGATGGTCAAAAGTCTGAGCCATCTTTACAAAGGAACTTTACTGTGAGATCCTCAGAAGAAAATGAGACCTTTGGAGGAGCATCTATTGATGTTGAAGATGGAACATCATTAGCTGAAGATCAAAACTGGTCAGGTCTGGAGGGTGTCACCAGAGTAAACTCACTGGTTCAACTTCCTAGATTTTCAGAGGAAAGGCCAAACTCTTGA 1440 0.4222 MGCCVSTSSRSTCSSKSYGDTVSPSCLEMGFCGQKRTRRTFSDHVVSLHKLPSLPNRIFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMSEDVIFCGVFDGHGPHGHLVARKVRDALPIKLLSCLHSCELRQNGSGKACFKGDIKPESGESEKDFSAEDTLNSMWRDAFMKAYKAMDKDLRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAIMGSKDNNDLMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHQLLTDRDQFIVLASDGVRYFNLVSIVWDVLSNEEVVEIVSSAPSRSSAARVLVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDPESDCDEPCFSSATIQSNHSGNPVESDDGQKSEPSLQRNFTVRSSEENETFGGASIDVEDGTSLAEDQNWSGLEGVTRVNSLVQLPRFSEERPNS. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05394 479 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g05394 479 SUPERFAMILY PP2C-like 58 381 IPR036457 -
Seca3g05394 479 SMART PP2C_4 55 377 IPR001932 -
Seca3g05394 479 ProSiteProfiles PPM-type phosphatase domain profile. 66 379 IPR001932 -
Seca3g05394 479 FunFam probable protein phosphatase 2C 52 57 382 - -
Seca3g05394 479 Pfam Protein phosphatase 2C 141 357 IPR001932 -
Seca3g05394 479 Gene3D - 57 381 IPR036457 -
Seca3g05394 479 CDD PP2Cc 65 379 IPR001932 -
Seca3g05394 479 MobiDBLite consensus disorder prediction 397 435 - -
Seca3g05394 479 MobiDBLite consensus disorder prediction 397 446 - -
Seca3g05394 479 PANTHER PROTEIN PHOSPHATASE 65 377 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05394 Seca-Chr3 107672570 107677772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05394 1 479 PP2C-type Phosphatase Gene Family AT1G03590 67.967 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05394 - - gmx:100798340 836.639