Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05384 ATGGGTGAGGAGAGATCTGCTTCACAGTACAAGAGAGTGAAGATCCATGGAAAAGTTCTATTGGGATTTATGTTGATCTGCTTTGTACAGTTTTCTCTTGCAGACACTAATCCTACTGATGTTGCTGCAATTAATAGCTTATATACTGCATTGGGCAACCCTGTTCTTCCTGGGTGGGTTTCAAGTGGGGGAGACCCGTGCGGACAAGGGTGGCAAGGCGTTCAATGTAATGGTTCAGAAATACAATCAATAGTCCTGAATGGAGCAAATTTGGGAGGAGAACTGGGTGATAGCTTGGGAACGTTTGTTTCTATCAGAGCAATAGCTCTAAGCAACAACAACATTGGGGGAAGCATTCCATCCAGTTTGCCAGTCACCTTGCAAACCTTTTTTCTTTCAGATAACCAGTTCACAGGAAGTATTCCAACCTCTTTATCTACATTGACTGAACTGACTGACATGTCTCTTAACGATAATCTTTTAACTGGAGAAATACCAGATGCCTTTCAGTCTCTTATGCATTTGATCAATCTAGATTTATCTAGTAATAATTTGAGTGGGGAATTGCCTCCATCTCTGGAGAATTTGTCAGCTCTGACCACCTTACAAGATGGAAACCCGTTTAATCTCAGTGGCAATGCTACTGTAGCTCCAGCTCATCCACCTCGTTCTCCAGTGACACCACCACCACCAGGAACTGTGGTTTCTGGTACTCCTTCTGGACGTGTTCCTACTAAACAGGCTGATGGACCAAGTGCAGCAAAGGAATCAAGTTCTGGGAAATCGAAAAAGTCTACCAAAAGGGTGGTTTGGATAACTATTTCTGGTATATTGGTGTTTCTTATTCTGGCACTGGCGCTTGTTCTCTTTATTCCAAGATGTAGCAGAAGAGAACGGGTTGACAGAACTTCCAACTCCAAGCAACATCAAATTGGTGCATATGGAGTACCAAAAGGAGCTGTTGTGAAGCCTAAAGAGGATCATCAAGCAGAGAAAGACAAGAAAAGCATGGGAACACTACCAAAGCTGTTAGATCATGAGATAGATATGAGTGCACTAGATGTAAATTTAATGCCTCCTCCACCCCCACCTCCCCCGCCTCCACCTCCTCCACCACTTTCTGCTGAGAAGGTGATTGTGGAGCCAACCACATTCAGAGGGGCTGACATCAATCCTTCCAAAAAAAGTCCAGTTCCTCCCACTTTCGCAAAATCATTCACCATTGCATCCCTTCAACAATATACAAATAGCTTTTCGCAAGACAATCTTATAGGATTAGGCATGCTGGGGACTGTGTATAGGGCAGAGCTTCCTGATGGGAAGATACTTGCTGTGAAGAAACTGGACAAGAGAGTTTCTGATCACCAAAAGGATGAAGAGTTTCTTGAACTGGTAAACAATATTGACAGAATCCGGAATGCAAATATTGTTGAGCTTATTGGGTACTGTGCAGAGCACGGTCAAATGCTTCTAATCTATGAGTACTGCAGTAATGGGTCACTACAGGATGCACTCCATTCAGACGATGAATTCCAAACAAGACTGTCATGGAATACTCGCATTCGGATAGCACTTGGGGCAGCTAGAGCCTTAGAGTACTTGCATGAGCAATGTCAGCCACCTGTTGTACACAGAAATTTCAAGTCTGCTAATATTCTCCTTGATGATGATTTATCTGTGCGTGTATCTGATTGTGGTTTGGCTCCATTAATAACTAAAGGTTCTGTTAGTCAGCTCTCAGGACAACTGCTAACAGCTTATGGCTATGGGGCCCCAGAATTTGAGTCAGGAATTTACACATACCAGAGTGATGTGTACAGCTTTGGAGTGGTTATGTTAGAACTCTTGACAGGCCGTCAGTCCTATGACAGGAAGCGCCCTCGAGGAGAGCAGTTTCTGGTAAGATGGGCAATTCCTCAACTTCATGATATTGATGCATTATCAAGAATGGTTGATCCTTCTCTGAATGGAGAATACCCTGCCAAATCATTGTCAAATTTTGCGGACATTATTTCTAGATGTGTTCAGTCAGAGCCAGAATTTAGGCCAGCAATGTCAGAGGTTGTCTTGTACTTACTAAATATGATAAGGAGGGAATCTCAGCAAAATGAATAG 2115 0.4317 MGEERSASQYKRVKIHGKVLLGFMLICFVQFSLADTNPTDVAAINSLYTALGNPVLPGWVSSGGDPCGQGWQGVQCNGSEIQSIVLNGANLGGELGDSLGTFVSIRAIALSNNNIGGSIPSSLPVTLQTFFLSDNQFTGSIPTSLSTLTELTDMSLNDNLLTGEIPDAFQSLMHLINLDLSSNNLSGELPPSLENLSALTTLQDGNPFNLSGNATVAPAHPPRSPVTPPPPGTVVSGTPSGRVPTKQADGPSAAKESSSGKSKKSTKRVVWITISGILVFLILALALVLFIPRCSRRERVDRTSNSKQHQIGAYGVPKGAVVKPKEDHQAEKDKKSMGTLPKLLDHEIDMSALDVNLMPPPPPPPPPPPPPPLSAEKVIVEPTTFRGADINPSKKSPVPPTFAKSFTIASLQQYTNSFSQDNLIGLGMLGTVYRAELPDGKILAVKKLDKRVSDHQKDEEFLELVNNIDRIRNANIVELIGYCAEHGQMLLIYEYCSNGSLQDALHSDDEFQTRLSWNTRIRIALGAARALEYLHEQCQPPVVHRNFKSANILLDDDLSVRVSDCGLAPLITKGSVSQLSGQLLTAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDRKRPRGEQFLVRWAIPQLHDIDALSRMVDPSLNGEYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLLNMIRRESQQNE. 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05384 704 MobiDBLite consensus disorder prediction 238 262 - -
Seca3g05384 704 Gene3D Phosphorylase Kinase; domain 1 389 495 - -
Seca3g05384 704 SUPERFAMILY L domain-like 36 204 - -
Seca3g05384 704 Pfam Protein tyrosine and serine/threonine kinase 421 690 IPR001245 GO:0004672|GO:0006468
Seca3g05384 704 SUPERFAMILY Formin homology 2 domain (FH2 domain) 362 372 - -
Seca3g05384 704 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 37 218 - -
Seca3g05384 704 Gene3D Ribonuclease Inhibitor 37 220 IPR032675 -
Seca3g05384 704 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 386 495 - -
Seca3g05384 704 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 496 704 - -
Seca3g05384 704 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 25 699 IPR046959 -
Seca3g05384 704 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Seca3g05384 704 MobiDBLite consensus disorder prediction 221 235 - -
Seca3g05384 704 ProSiteProfiles Protein kinase domain profile. 418 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05384 704 SUPERFAMILY Protein kinase-like (PK-like) 395 692 IPR011009 -
Seca3g05384 704 MobiDBLite consensus disorder prediction 298 337 - -
Seca3g05384 704 Gene3D Transferase(Phosphotransferase) domain 1 496 704 - -
Seca3g05384 704 MobiDBLite consensus disorder prediction 321 337 - -
Seca3g05384 704 MobiDBLite consensus disorder prediction 210 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05384 Seca-Chr3 107295033 107302036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05384 26 699 Strubbelig Receptor Gene Family AT4G03390 59.733 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca3g05384 PK_Tyr_Ser-Thr 3.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05384 - - gmx:100811490 996.882