Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05347 ATGACTTCCATTAAGGTCATAGAGCAGTGTCTAATTGCACCACCACCTGGTTCACTTCCCTCAACCACTCTTCCCCTCACTTTCTTTGACATCCCATGGTTTTACTGCCACCCAGTGCAACGCATCTTCTTCTACCACTTTCCCTACCCCACACACCACTTCCTCCAAACAGCACTTCCAATTCTCAAGCACTCTCTTTCCCTCTCCCTCCAACATTTCTTCCCCTTCTCTTCCAATCTCATCGTCCCCTCAAACCCCCACCTCCACGTCCCTTACATCCGCTACCTCCCTAACGACTCTCTCTCCTTCACCGTTGCAGAGTCCACCGCAGACTTCAACCTCCTCATATCTGATTCACCACAGGACGTTCGAAACTGGCACCCCCTTGTCCCTACCCTGCCTTCACATCTTACAGAGGAAGATGGCACACGTGTGTTCCCTCTCATGGCCATTCAGATCACTGTCCTACCAAACTCTGGATTCAGCATCTGCCTCACGTTCAACCACCTTGCTGGAGATGGAAAATCACTTCACCATTTCATTAAGTATTGGGCCTCTGTTTCAAAGGCAACAAGATCAGGGGATTTGAGTTTGACTCCCCTTGAAGGCTCTCTGTCTCTTCCTTTCCATGATAGGAACAGAGTAAAAGACCCAAAGGGGCTTAAGCTTGTTTACACACGGGAACTACTGGATTCTGAGTCGGAAAAGATGGAGTTTGCAGGGATCGTGCAAGATGTTTACACTAACAAGGTACGTGCCACTCTTGTGTTGAGTCGTGAACGAGTTGAGAAACTAAAAAAATGGACCACTCTTCAATGTGCTTTAGGGATACAACACGTGTCAACCTTTGTGGTAACGTGCTCGTTGATTTGGGTTTCCATGATAAAATCAGAGCAGAGCAATGTTAATTGTGTTGATGAACATCAACTCTGCTACTTGGTGTTTCTAGCGGATTGTCGTGGTCGTCCTGAACTTTCAATACCTTCAACGTACTTTGGGAATTGTCTTGCAACTTGCATTGTGGCAATCAAGAGGGGTGAGCTAGTGGGAGAAAATGGGATTGTTGAGGTAGCAAATGGTATTCAAAGGGAAGTTAGAGATTGGAAGAAAGATGCATTACGAAGGGCTGACACGTTGATGTCAGATTATAGAGAATTAGCAAAACCAGGTCAGTGTGTGGTAGTAGTTGCAGGGTCACCAAAACTGGGTGTATATGAGACTGATTTTGGGTGGGGAAAGCCTAAGAAGTCTGAAGCAGTGCATCTTGATTCATCAGGATCAATTTCTCTTTCTGATTGTAGAGACAAAGAAGGTGGAATTGAGGTTGGATTGGCACTTGAAAGAATTCGAATGACTACTTTCCTCAACATCGTAGAAGAACAACTTAATAATATTGTAGCACGTGAGTGA 1410 0.4553 MTSIKVIEQCLIAPPPGSLPSTTLPLTFFDIPWFYCHPVQRIFFYHFPYPTHHFLQTALPILKHSLSLSLQHFFPFSSNLIVPSNPHLHVPYIRYLPNDSLSFTVAESTADFNLLISDSPQDVRNWHPLVPTLPSHLTEEDGTRVFPLMAIQITVLPNSGFSICLTFNHLAGDGKSLHHFIKYWASVSKATRSGDLSLTPLEGSLSLPFHDRNRVKDPKGLKLVYTRELLDSESEKMEFAGIVQDVYTNKVRATLVLSRERVEKLKKWTTLQCALGIQHVSTFVVTCSLIWVSMIKSEQSNVNCVDEHQLCYLVFLADCRGRPELSIPSTYFGNCLATCIVAIKRGELVGENGIVEVANGIQREVRDWKKDALRRADTLMSDYRELAKPGQCVVVVAGSPKLGVYETDFGWGKPKKSEAVHLDSSGSISLSDCRDKEGGIEVGLALERIRMTTFLNIVEEQLNNIVARE. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05347 469 Gene3D - 3 241 IPR023213 -
Seca3g05347 469 PANTHER - 4 464 - -
Seca3g05347 469 Gene3D - 247 465 IPR023213 -
Seca3g05347 469 Coils Coil 459 469 - -
Seca3g05347 469 Pfam Transferase family 4 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05347 Seca-Chr3 106432656 106434065 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05347 31 460 Monolignol Biosynthesis Gene Families AT5G48930 21.951 1.02e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05347 - - gmx:100797294 657.907