Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05344 ATGTCTCATCACAGTACAGTGAAGATCCTGGACCTGTGCCAAGTTGGTCCACCACCAGCCTCACTTCCCTCAACCACTCTTCCCCTCACTTTCTTTGACCTTCCATGGCTACACTGTCGCCCCGCAAAACGCATCTTCTTCTACCACTTTCCCCATCCCACACACCACTTCCTCCAAACAACACTTCCAATTCTCAAGCACTCTCTTTCCCTCACCTTCCAACATTTCTTCCCTTTCGCCGGCAATCTCATCATCCCTCCACAACCTCACCACCACGTCCCTTACATCCGCTACCTCCCCGGCGACTCTGTCTCCTTCACTGTCGCAGAGTCCACTGCAGACTTCAACCTCCTCATATCTGATTCACCACAGGACGTTCGAAACTGGCACCCCCTTGTCCCTACATTGCCTTCACCTCGTACTGACGACGATGGCACACGTGTTATCCCTCTCATGGCCATTCAGGTCACGATTCTACCATGCTATGGACTCAGCATCTGTGCCACGTTCAGCCATGTTGCTGCTGATGGAAAATCACTTCACCATTTCATGAAGTATTGGGCCTCTGTTTCCAAGGCAAATGGGGATTTGACTCCCCTTGAAGGCACCCTGTCTCTTCCTTTCCATGATAGAGACAGAGTTAAAGACCCAAAGGGGCTTAAGCTTGTTTACTTACGAGAAAGCATGAAGTTTGAAGGCTTCGTGCGAGATGTTTACACTAACAAGGTACGCGCCACTTTTGTGTTGAGTCATGAACGAGTTGAGAAAGTCAAGAAATGGATTTCTCTTAAATGTGCTAGCAGCTACGCTTCAGGGACACCGCACGTCTCAACCTTTGTGGTAACATGCTCCTTGGTTTGGGTTTGTATGATAAAATCAGAACAGAGGAATGTTAATTGTGTTGCAAAAGGCTGTGATGAACTCTGTTACATGGTCTTTGTAGCAGATTGCCGTGACAGTCCTGAATTTGCATTACCTTCAACGTACTTTGGGAATTGCTTAGCCTCTCTTATTCCGGCTGTCAAGAGGGGTGAGATAGTTGGGGAGAATGGGATCGTTGTGGCAGCAAATGCTATTGGAAGGAAGATTAGAGATTTCAAGAGTGATGCTATGGGAGGGGCTGAAACATTGATGTCAGATTTCAGAGAATTAGGAAAACCAGGTAAGTCTGTATTAGTAGTTGCAGGGTCACCAAAACTAGGCGTGTATGAAACTGATTTTGGGTGGGGAAATCCCAAGAAGTCTGAAGCAGTGCATCTTGATTAA 1266 0.4731 MSHHSTVKILDLCQVGPPPASLPSTTLPLTFFDLPWLHCRPAKRIFFYHFPHPTHHFLQTTLPILKHSLSLTFQHFFPFAGNLIIPPQPHHHVPYIRYLPGDSVSFTVAESTADFNLLISDSPQDVRNWHPLVPTLPSPRTDDDGTRVIPLMAIQVTILPCYGLSICATFSHVAADGKSLHHFMKYWASVSKANGDLTPLEGTLSLPFHDRDRVKDPKGLKLVYLRESMKFEGFVRDVYTNKVRATFVLSHERVEKVKKWISLKCASSYASGTPHVSTFVVTCSLVWVCMIKSEQRNVNCVAKGCDELCYMVFVADCRDSPEFALPSTYFGNCLASLIPAVKRGEIVGENGIVVAANAIGRKIRDFKSDAMGGAETLMSDFRELGKPGKSVLVVAGSPKLGVYETDFGWGNPKKSEAVHLD. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05344 421 Gene3D - 6 237 IPR023213 -
Seca3g05344 421 PANTHER - 7 421 - -
Seca3g05344 421 Pfam Transferase family 20 415 - -
Seca3g05344 421 Gene3D - 239 421 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05344 Seca-Chr3 106389836 106391101 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05344 45 412 Monolignol Biosynthesis Gene Families AT5G48930 24.112 3.09e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05344 - - gmx:100797294 571.622