Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05341 ATGGCTCATGACAGAGTGTCAGTGAAGATCTTAGATCGGTGCGAAGTCGTTCCACCACCAGGCTCAATTCCCTCAACCACTCTTCCCCTTACTTTCTTGGATATTTCATGGCTATACACAAAGCCCCCAGTGCAACGCATCTTCTTCTACCACTTTCCCCATCCCACACACCACTTTCTCCAAACAGCACTTCCAATTCTCAAACACTCTCTTTCCCTCTCCCTCCAACACTTCTTCCCCTTCTCCTCCAATCTCATAATCCCCCCAGATCCCCAACACCATGCCCCTTACTTCCGCTACCTCCCTAACGACTCTCTCTCCTTCACCGTCGCAGAGTCCACCGCAGACTTCGACCTCCTCGTATCTGATTCACCACAGGACGTTCGAAACTGGCACCCCCTTGTCCCTACCCTGCCTTCACCTCTCACAGAGGAAGATGGCACACTTGTGTCCCCTCTCATGGCCATTCAGGTCACTGTCCTACCAAACTCTGGATTCAGCATCTGCCTCAAGTTCCCCCATGTTGCTGGTGATGGCAAATCACTTCATCTTTTCATGAAATATTGGGCCTCTGTTTGCCAGGCAAGAGGGGATTTGGCTTCCCTTGAAGGCTCTTTAACTCTTCCTTTCCATCAAAGGGAAAGAGTCAAAGATCCAAAGGGGCTTAAGCTTCTCTACTTACAACAACTTCAACATTCAGGAAGCATGGAAATAACAGACTTCATTCCAGATATTTTCAATAACAAGGTACGCGCCAGTTTTGTGTTGAGTCGTGAACGAGTTAAGAAACTGAAGAAATGGATTTCTCTTAAATGTGCCAGCGACGCTTCAGGGACACCGCACGTGTCAACGTTTGTGGTGACGTGTTCCTTGATTTGGGTTTCTATGATTAAGTCGGAACAGAGCAAAGGTGACTCTGTTGCGAAAGGCTGTGATGAACTTTGCCACTTGGTCTTTCTAGCAGATTGTCGTGAAAGTCTTGAATTGTCATTACCTTCAACGTACTTTGGGAATTGCTTAACCTCTCTTATTCTGGCTGTAAAGAGGGGTGAGCTCGTCGGAGAAAATGGGATGGTTGTGGCAGCCAATGCTATTGAAAGGAAAATTAGGGATTTCAAGGCGGATGCTTTGAGAGGGGCTGAATCATTGATGTCAGATTATATAGAATTATTCAAACCAGATCAATCTGTTGTTGTGATCGCGGGTTCACCAAAACTTGCGGTGTACGAGACTGATTTTGGGTGGGGAAAGCCAAAGAAGTCTGAAGTGGTTCATCTTGATAGTATTGGAGGAATTTCTCTTTCTGATTGTAGGGACAGAGAAGGTGGAATTGAAGTTGGAATGGCACTTGGAAGAACTCAAATGGATAATTTCATCAACATCTTAGAAGAACACCTTGATAATATTGTAGTTTAA 1416 0.4569 MAHDRVSVKILDRCEVVPPPGSIPSTTLPLTFLDISWLYTKPPVQRIFFYHFPHPTHHFLQTALPILKHSLSLSLQHFFPFSSNLIIPPDPQHHAPYFRYLPNDSLSFTVAESTADFDLLVSDSPQDVRNWHPLVPTLPSPLTEEDGTLVSPLMAIQVTVLPNSGFSICLKFPHVAGDGKSLHLFMKYWASVCQARGDLASLEGSLTLPFHQRERVKDPKGLKLLYLQQLQHSGSMEITDFIPDIFNNKVRASFVLSRERVKKLKKWISLKCASDASGTPHVSTFVVTCSLIWVSMIKSEQSKGDSVAKGCDELCHLVFLADCRESLELSLPSTYFGNCLTSLILAVKRGELVGENGMVVAANAIERKIRDFKADALRGAESLMSDYIELFKPDQSVVVIAGSPKLAVYETDFGWGKPKKSEVVHLDSIGGISLSDCRDREGGIEVGMALGRTQMDNFINILEEHLDNIVV. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05341 471 Gene3D - 7 241 IPR023213 -
Seca3g05341 471 Pfam Transferase family 14 459 - -
Seca3g05341 471 Gene3D - 246 469 IPR023213 -
Seca3g05341 471 PANTHER - 7 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05341 Seca-Chr3 106348901 106350316 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05341 24 418 Monolignol Biosynthesis Gene Families AT5G48930 25.416 3.54e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05341 - - gmx:100797294 620.928