Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05330 ATGGATCAATTTGACCTTGAAAACCCTCTAGAAAACTTCCACGATGTTCCTTGTGATGCTGTCTCTTCCCTCTTCCTCATTGAATCTGACCACATCCCACCACCAAATTACTTTCAGAGTCTCAAAGCCAGCGACTTTGATATCTCTGTTAGAAGAGATGTCATCTCTTTGATCTCACAGTTGTCCTGCACCTTCGATCCATTTCTTCCTTACCTAGCTATCAACTATTTGGATCGCTTCCTCGCTAGCCAAGGGGTATTGCAACCAAAGCCATGGACCAACAAGTTACTTGCAATTTCTTGCTTCTCTCTAGCAGCCAAGATGTTGAAAACAGAGTACTCTGCCACTGATGCTCAGGCTCTTGTGAATAATGGTGATGGAAGTGTCATTTTTGAGACACAAACAATACAAAGAATGGAAGCACTTGTCTTGGGGGCTCTACAATGGCGAATGCGTTCGATCACCCCTTTCTCTTTCATTCCTTTCTTCAGCAATTTGTTCATGATCAATGACACTGCATTGAGGCAGGTTCTGAAAGATCGAGCATCTCAAATTATACTGAAGTCACAGAGAGATTTAAAGGTTTTGGAATTCAAGCCATCCATAGTTGCTGCATCAGCCCTTCTGTATGCTTCACATGAATTGTTTCCCTTTCAATATCCATGCTTCTTAAGAGCAATATCCGATTGCTCATATGTAAATAAAGAAAGTGTGGTGCAGTGCTATAATGTGATAGAAGACACAGCTAGGGAGGAGTACGAATCTGTGTTCAATGTAAATTCAAGTTCAGACACACCGGTTAATGTGTTAGATGAACATTTTCTGAGCTTGGAAAGTGAAAAAACCAACGGAACCAACGCTGCTCCCACTACTCTGATACATGAGAAGGACTACAAGAGAAGGAAAATCACCGATTATGGTAGCACAGTTCAGTTTTCACATTTTCATTAA 951 0.4132 MDQFDLENPLENFHDVPCDAVSSLFLIESDHIPPPNYFQSLKASDFDISVRRDVISLISQLSCTFDPFLPYLAINYLDRFLASQGVLQPKPWTNKLLAISCFSLAAKMLKTEYSATDAQALVNNGDGSVIFETQTIQRMEALVLGALQWRMRSITPFSFIPFFSNLFMINDTALRQVLKDRASQIILKSQRDLKVLEFKPSIVAASALLYASHELFPFQYPCFLRAISDCSYVNKESVVQCYNVIEDTAREEYESVFNVNSSSDTPVNVLDEHFLSLESEKTNGTNAAPTTLIHEKDYKRRKITDYGSTVQFSHFH. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05330 316 FunFam D6-type cyclin 34 148 - -
Seca3g05330 316 Pfam Cyclin, N-terminal domain 26 151 IPR006671 -
Seca3g05330 316 Gene3D - 34 152 - -
Seca3g05330 316 CDD CYCLIN_AtCycD-like_rpt2 154 245 - -
Seca3g05330 316 SMART Cyclin_C_2 154 269 IPR004367 -
Seca3g05330 316 FunFam D6-type cyclin 149 243 - -
Seca3g05330 316 SUPERFAMILY Cyclin-like 13 151 IPR036915 -
Seca3g05330 316 PANTHER CYCLINS 26 255 IPR039361 -
Seca3g05330 316 Pfam Cyclin, C-terminal domain 154 263 IPR004367 -
Seca3g05330 316 Gene3D - 23 243 - -
Seca3g05330 316 SMART cyclin_7 52 145 IPR013763 -
Seca3g05330 316 SUPERFAMILY Cyclin-like 136 250 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05330 Seca-Chr3 105908549 105911293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05330 3 304 Core Cell Cycle Gene Families AT4G03270 43.574 4.33e-74 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05330 K18812 - gmx:100799951 533.102