Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05328 ATGGTAAGAGCCCCTTGTTGTGACAAAAATGGACTGAGAAAAGGCGCGTGGACACCCGAGGAAGACAGCAAGTTGATTGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCTACTCCCCAAGTTTGCAGGGTTGATTTTCATTTCAGGTCTTGCAAGGTGTGGGAAGAGTTGTAGACTGAGGTGGCTCAATTATCTAAGGCCCGGCGTCAAAAGAGGGAACTTTAGTCAAGAAGAAGAAGAGATTATCATCAGACTTCACGGAAAGCTGGGTAATAAATGGTCTTCGATTGCTACTCATTTGCCAGGGAGAACGGATAATGAGATAAAGAATCACTGGCACACCTCTCTGAAGAAGCGTTTTGAGCAGAACAAGTCAGACACTAGAGTTGGAACTGAAAAGGCCAAAGACTCAATGTCAAACAAGAATGGCTCATCAATGGAAGAAACCAATAAGCAACTTGAGAGTGTGTCGACAGAGAACAGCAGTGGTGGTCCTGATACTTGTCCGTTTTCTCCTCAACCATCGTCTAGTGGATTCTCCTGTGTAACAACAGACACTACTCTGGCAGCTACCACAAACAATGAAAAATTTGTTCTAGAAGAGGATGACTTTTCTTTTCTGGATGTTTACACGGAGGCCGTTAGTGAAAATTTCTGGACAGAACCATTTCTGACTGACAGTTCCTATTATCCTCAAACTGAACCCGTTGGGTGTGAAATTGAATACTTTAGTCCCGTGTACGATGTAGAGCTTTGGAGCCATAATAATAATAATTTGTACGAGGAATATGGGGGTTTATTCTATTAA 813 0.4317 MVRAPCCDKNGLRKGAWTPEEDSKLIAYVTRYGCWNWRLLPKFAGLIFISGLARCGKSCRLRWLNYLRPGVKRGNFSQEEEEIIIRLHGKLGNKWSSIATHLPGRTDNEIKNHWHTSLKKRFEQNKSDTRVGTEKAKDSMSNKNGSSMEETNKQLESVSTENSSGGPDTCPFSPQPSSSGFSCVTTDTTLAATTNNEKFVLEEDDFSFLDVYTEAVSENFWTEPFLTDSSYYPQTEPVGCEIEYFSPVYDVELWSHNNNNLYEEYGGLFY. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05328 270 ProSiteProfiles Myb-like domain profile. 9 67 IPR001005 -
Seca3g05328 270 Pfam Myb-like DNA-binding domain 14 67 IPR001005 -
Seca3g05328 270 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Seca3g05328 270 Gene3D - 74 148 - -
Seca3g05328 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Seca3g05328 270 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Seca3g05328 270 MobiDBLite consensus disorder prediction 138 177 - -
Seca3g05328 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 67 IPR017930 -
Seca3g05328 270 CDD SANT 16 67 IPR001005 -
Seca3g05328 270 CDD SANT 75 118 IPR001005 -
Seca3g05328 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 192 - -
Seca3g05328 270 SMART sant 13 69 IPR001005 -
Seca3g05328 270 SMART sant 72 120 IPR001005 -
Seca3g05328 270 SUPERFAMILY Homeodomain-like 11 114 IPR009057 -
Seca3g05328 270 MobiDBLite consensus disorder prediction 125 177 - -
Seca3g05328 270 Gene3D - 14 72 - -
Seca3g05328 270 FunFam MYB-related transcription factor 13 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05328 Seca-Chr3 105723814 105725592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05328 1 230 MYB Transcription Factor Family AT2G31180 43.043 2.20e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g05328 Myb_DNA-binding 4.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05328 K09422 - gmx:100778518 275.018