Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05326 ATGCTCAACATGATGAGGAAGCCATGCTTCTGGCTTTCTCTTCTCATCCTCTTCTTCTCTTTACACCCTTGTCCTTCCCTTGCAGCTCTAACCACCATCTCTGCAAACCAATCTCTCTCTGGTGATCAAACTCTTGTGTCTAAAGGTGGGATCTTTGAACTGGGTTTCTTCAAGCCAGGTAAGTCCTCTAACTACTACATAGGCATGTGGTACAAAAAGGTCTCTCAACAGACAATTGTTTGGGTAGCTAATAGAGATAACCCAGTCTCTGATAAGAATACTGTCACATTAACAATATCTGGTGGTAATTTAGTTCTATTAGATGAGTCTTCAAAACAAATTTGGTCAACAAATATGAGTTCTCCCAGTTCAGGTTCTGTTGTAGCTGTCCTCCTAGACAATGGAAATCTTGTTTTAAGAGATAGTGCTGATGCATCAGATGATTCAGATCCTTTGTGGCAGAGTTTTGATCACCCAACAGATACATGGCTTCCTGGTGGCAAAATTAAACTGGACAACAAAACAAAGAAGCCTCAATATCTCACTTCATGGAAGAATGAAGAAGATCCTGCACAGGGTCTCTTTTCTCTGGAACTAGACCCCAAAGGAACCACTTCTTATTTGATTCTTTGGAATAAGTCTGAAGAGTATTGGACAAGTGGCCCTTGGAATGGACGCATTTTCAGCCTGGTTCCTGAAATGAGGGCTAATTATATCTACAATTTTTCGTTTGTGTCAAACGAGAATGAAAGCTATTTCACCTATTCCATGTATAATCCTTCCATTATATCTCGGTTTGTGATGGATGTCTCGGGGCAGATCAAGCAACTCTCATGGTTGGAAAATGTTCAAGAATGGAACTTGTTTTGGTCACAGCCTAGAAGACAATGTGAGGTTTATGCTTTCTGTGGTACATTTGGGAGCTGCACTGAGTACTCAATGCCATACTGTAATTGTTTAACTGGTTTTCAGCCCAAGTCACTGGCTGATTGGAATCTGGAGGATTTCTCAGGTGGGTGTCAGAGGAAAACAAAGTTGCAATGTGAGAATTCCAATCCTTCTAATGGGAATAAGGACAGGTTCCTAGCAATCCCCAACATGGCTTTACCTAAACATGCACAATCTGTGGGATCAGGGAATGTAGGGGAGTGTGAATCAACCTGCTTGAACAACTGCTCCTGTACTGCCTATGCATATGACAGTAATGGATGTTCAATTTGGATTGGAGATCTTCTGAATCTGCAGCAACTGTCTTCAGATGATAGTAGTGGAGAAACTTTGTATCTCAAACTTGCAGCATCTGAGTTTCATGAAGATAAAAACAATAAAGGGACCATTATTGGTGTTGTTGTAGGGGTGGTTGTTGGCATAGGGGTTCTCCTTGCCCTTATTCTGTTTGTCATGCTTAGGAGAAGAAAGAGAATGGTTGGAAAGGGAAAGCCTGTGGAGGGTTCATTGGTAGCATTTGGGTATAGAGATTTGCAAAATGCAACTAAGAATTTCTCTGAGAAATTGGGAGGAGGTGGCTTTGGTTCTGTTTTCAAAGGAACATTGGCTGATTCAAGTGTGGTAGCAGTGAAGAAGCTGGAAAGTATTAGCCAAGGAGAGAAGCAGTTCAGAACAGAAGTGAGTACAATAGGGACAGTACAACATGTGAATCTTGTTAGGCTACGTGGATTCTGCTCAGAAGGTACCCAAAAGTTGTTAGTTTATGATTACATGCCAAATGGTTCCTTGGAATTTCATCTGTTCCGGGACAAGGACTCTGAGGTGTTGGAATGGAAAATGAGATACCAAATTGCCCTTGGAACTGCAAGGGGATTAACTTACCTCCACGAGAAATGCAGAGACTGTATTATACACTGTGATGTAAAGCCAGAAAACATTCTCCTAGATGCTGAATTTTGTCCAAAAGTTGCTGACTTTGGCTTGGCAAAGCTAATTGGAAGGGATTTCAGCAGGGTCCTCACAACCATGAGAGGAACAAGAGGTTATCTTGCTCCAGAGTGGATTTCTGGGGTGGCTATAACAGCTAAAGCTGATGTTTACAGCTATGGAATGATGCTTTTTGAGTTTGTATCAGGTAGGAGGAACTCTGAGCCATCTGCAGATGGAAAAGTTGCCTTCTTTCCTACCTCTGCTGCAAGTGTAGTTGTCCAAGGTGGCAATGTCCTTAGTCTTTTGGACCCAAAGTTGGAGGGAAATGCTGACATTGAAGAGGTAACTCGAGTAATAAAAATTGCATCTTGGTGTGTTCAAGACAATGAAATTAACAGGCCAACCATGGGTCAGGTAGTTCAAATTCTTGAGGGGATCTTGGATGTCAATATGCCTCCAATTCCAAGATCCCTTCAAGTGTTTGTTGACAATGACCAGGAGAACTTAGTATTCTACACTGACTCAAGCTCCACACAGAGTTCACAGGTAAAGAGCAGCGTCTCAATAACCTCCTCTCAGACCAAAAGCAACATCTCATCAGCAAGCACCAAGTCCTTGGGAGAAAATTAG 2508 0.4207 MLNMMRKPCFWLSLLILFFSLHPCPSLAALTTISANQSLSGDQTLVSKGGIFELGFFKPGKSSNYYIGMWYKKVSQQTIVWVANRDNPVSDKNTVTLTISGGNLVLLDESSKQIWSTNMSSPSSGSVVAVLLDNGNLVLRDSADASDDSDPLWQSFDHPTDTWLPGGKIKLDNKTKKPQYLTSWKNEEDPAQGLFSLELDPKGTTSYLILWNKSEEYWTSGPWNGRIFSLVPEMRANYIYNFSFVSNENESYFTYSMYNPSIISRFVMDVSGQIKQLSWLENVQEWNLFWSQPRRQCEVYAFCGTFGSCTEYSMPYCNCLTGFQPKSLADWNLEDFSGGCQRKTKLQCENSNPSNGNKDRFLAIPNMALPKHAQSVGSGNVGECESTCLNNCSCTAYAYDSNGCSIWIGDLLNLQQLSSDDSSGETLYLKLAASEFHEDKNNKGTIIGVVVGVVVGIGVLLALILFVMLRRRKRMVGKGKPVEGSLVAFGYRDLQNATKNFSEKLGGGGFGSVFKGTLADSSVVAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTQKLLVYDYMPNGSLEFHLFRDKDSEVLEWKMRYQIALGTARGLTYLHEKCRDCIIHCDVKPENILLDAEFCPKVADFGLAKLIGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEPSADGKVAFFPTSAASVVVQGGNVLSLLDPKLEGNADIEEVTRVIKIASWCVQDNEINRPTMGQVVQILEGILDVNMPPIPRSLQVFVDNDQENLVFYTDSSSTQSSQVKSSVSITSSQTKSNISSASTKSLGEN. 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05326 835 CDD B_lectin 36 159 IPR001480 -
Seca3g05326 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 224 IPR036426 -
Seca3g05326 835 ProSiteProfiles PAN/Apple domain profile. 348 432 IPR003609 -
Seca3g05326 835 SUPERFAMILY Protein kinase-like (PK-like) 485 806 IPR011009 -
Seca3g05326 835 FunFam Serine/threonine-protein kinase 574 777 - -
Seca3g05326 835 SMART ntp_6 356 431 IPR003609 -
Seca3g05326 835 SMART blect_4 36 159 IPR001480 -
Seca3g05326 835 Gene3D - 27 157 IPR036426 -
Seca3g05326 835 ProSiteProfiles Protein kinase domain profile. 499 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05326 835 FunFam Serine/threonine-protein kinase 25 156 - -
Seca3g05326 835 FunFam Serine/threonine-protein kinase 466 573 - -
Seca3g05326 835 CDD PAN_AP_plant 344 432 - -
Seca3g05326 835 PANTHER OS07G0415500 PROTEIN 12 781 - -
Seca3g05326 835 ProSitePatterns Protein kinases ATP-binding region signature. 505 528 IPR017441 GO:0005524
Seca3g05326 835 MobiDBLite consensus disorder prediction 803 835 - -
Seca3g05326 835 Gene3D Transferase(Phosphotransferase) domain 1 574 778 - -
Seca3g05326 835 SMART serkin_6 499 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05326 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Seca3g05326 835 CDD STKc_IRAK 505 772 - -
Seca3g05326 835 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Seca3g05326 835 Pfam D-mannose binding lectin 78 185 IPR001480 -
Seca3g05326 835 Pfam Protein kinase domain 502 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05326 835 Pfam PAN-like domain 356 413 IPR003609 -
Seca3g05326 835 PIRSF SRK 2 822 IPR024171 GO:0004674
Seca3g05326 835 Pfam S-locus glycoprotein domain 218 327 IPR000858 GO:0048544
Seca3g05326 835 Gene3D Phosphorylase Kinase; domain 1 466 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05326 Seca-Chr3 105454626 105457133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05326 455 779 Receptor kinase-like Gene Family AT5G20050 41.944 8.25e-79 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca3g05326 Pkinase 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05326 - - gmx:100782119 1270.37