Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05322 ATGAAGAACTGTGAGCTATGCAAGGTTCCGGCGAGGACCTTCTGCGAGTCTGACCAGGCAAGCTTATGCTGGGACTGCGACTCAAAGGTCCATGGAGCCAACTTCTTGGTGGCAAGGCACACCAGGACCCTTCTGTGCCACATGTGTCAGTCCCTCACGCCGTGGAAGGCCTCTGGCTCTAGGCTTGGAAACACTGTTTCCTTGTGCGACACGTGCGCCGGCGGAAACAAGGTCGACGGTGAACAAGGGGAAGAAAGCGAAGGAGGCAATGACGACGACATAGACACCACCGACTATGAAGACGAAGACGAAGACGATGACGAGGAGGAGGTTGCCGGTGACGAGGACGGTGATAACCAGGTAGTCCCTTGGTCCTCGACGGCACAGCCGCCGGCTCCAAGCTCATCCAGTAGCGAAGAGTCGGTTAGCAGGTGCAACAATGGCGATGAGGGGGTTTCTCAGTCAATGACATCAATTTCGTCGAAACGACGTCGTGAGGATCATGATTTTCAGGTTTACATTAAAGATTCGAATAATTGGGCATATCAACGAAGGTACGGTGCGAAGTGGAGAGATGAAGTTGGTTGGTTAAAGTGCGACGGGGAACCGCCGTCGAAGGTGTCGATGCAATCCTTAAGCGACGGAGAGACTAGACCGCCGTCACCATACGGTTGCTGTAATAGTAGAGCCTCCGAAGACGTTTGA 705 0.5376 MKNCELCKVPARTFCESDQASLCWDCDSKVHGANFLVARHTRTLLCHMCQSLTPWKASGSRLGNTVSLCDTCAGGNKVDGEQGEESEGGNDDDIDTTDYEDEDEDDDEEEVAGDEDGDNQVVPWSSTAQPPAPSSSSSEESVSRCNNGDEGVSQSMTSISSKRRREDHDFQVYIKDSNNWAYQRRYGAKWRDEVGWLKCDGEPPSKVSMQSLSDGETRPPSPYGCCNSRASEDV. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05322 234 MobiDBLite consensus disorder prediction 85 116 - -
Seca3g05322 234 SMART bboxneu5 1 45 IPR000315 GO:0008270
Seca3g05322 234 MobiDBLite consensus disorder prediction 77 166 - -
Seca3g05322 234 CDD Bbox1_BBX-like 4 45 - -
Seca3g05322 234 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 174 - -
Seca3g05322 234 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Seca3g05322 234 MobiDBLite consensus disorder prediction 120 159 - -
Seca3g05322 234 MobiDBLite consensus disorder prediction 200 234 - -
Seca3g05322 234 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05322 Seca-Chr3 105279668 105280814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05322 2 131 C2C2-CO-like Transcription Factor Family AT4G27310 44.099 5.49e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g05322 zf-B_box 7.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05322 - - gmx:100809520 224.942