Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05316 AGGAAAAGCATTCAAACTCAGGAGAGCTTTTATGATAGTGAAAGACATGTGAAAGGTTTGATTGACTTAGGAATATTAGAAGAAAAAGACAGTGAAGGCATTGATGTACCCTATTATTCTTTTGGAAGCATTCTAGCAGCTATAGATAATTTCTCAAATTCAAACAAGCTTGGACAAGGAGGTTATAGGCCTGTATATAAGGGAACGTTCCCTGGAGGTCAAGATATGGCTGTAAAGAGGCTTTCAAGTGTTTCAACTCAAGGCCTACAAGAATTCAAAAATGAGGTTGTTTCAATTGCCAAACTTCAACATCGGAACCTTGTTAGACTTAGGGACTATTGCATCAAAGGAGATGAAAAAATCTTACTGTATGAATACATGTCAAACAAGAGCTTGGATTCATTTATATTTGAGTATGCCTTGGACGGTTTATTTTCAGTCAAATCCGATGTTTTCAGTTATGGTGTAGTCCTATTAGAGATTCTAAGTGGAAAAAGGAACACAGGATTCTATCAATCAAAACAAATTTCCAGCCTTTTGGGTTATGCATGGAGATTATGGACAGAGAATAAACTGCTAGAAATTATGGACCCTTCTCTGGGTGAAACTTGCAATGCAAATCAATTCATTAAGTGTGCACTTATTGGGCTGTTATGCGTACAAGATGAACCTGGAGATCGACCCACTATGTCAAATATTGTGACAATGCTTGACAGCGAGACTGCAACCATCCCAATTCCAACGCAGCCAACGTTTTATACGATGAAACGTCAATCTAGCACGACTTCTTCTTCTAGCAAAGCAGAAATAAGTTTGCAATTTGAGAGTAGTCAAGAAGGTCGATAG 846 0.3794 RKSIQTQESFYDSERHVKGLIDLGILEEKDSEGIDVPYYSFGSILAAIDNFSNSNKLGQGGYRPVYKGTFPGGQDMAVKRLSSVSTQGLQEFKNEVVSIAKLQHRNLVRLRDYCIKGDEKILLYEYMSNKSLDSFIFEYALDGLFSVKSDVFSYGVVLLEILSGKRNTGFYQSKQISSLLGYAWRLWTENKLLEIMDPSLGETCNANQFIKCALIGLLCVQDEPGDRPTMSNIVTMLDSETATIPIPTQPTFYTMKRQSSTTSSSSKAEISLQFESSQEGR. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05316 281 MobiDBLite consensus disorder prediction 256 281 - -
Seca3g05316 281 Pfam Protein tyrosine and serine/threonine kinase 138 237 IPR001245 GO:0004672|GO:0006468
Seca3g05316 281 ProSiteProfiles Protein kinase domain profile. 51 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05316 281 Gene3D Transferase(Phosphotransferase) domain 1 125 240 - -
Seca3g05316 281 Gene3D Phosphorylase Kinase; domain 1 25 124 - -
Seca3g05316 281 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 137 - -
Seca3g05316 281 Pfam Protein kinase domain 52 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05316 281 FunFam Os08g0179000 protein 22 126 - -
Seca3g05316 281 SUPERFAMILY Protein kinase-like (PK-like) 34 271 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05316 Seca-Chr3 104938538 104940006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05316 39 258 Receptor kinase-like Gene Family AT4G23280 38.281 2.28e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05316 PK_Tyr_Ser-Thr 1.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05316 - - qlo:115977476 251.136