Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05306 ATGAAAGCTGAGCTAAAGGGAACGTCCATTTCCTTTCAAAACCCTACTCTTTTTAACACACCCCATAATCCTCTTTCAGGAGCACTTAAAGGGTGTCTTGGAAGCCTAGATGGAGCTTGTATTGAGAAGCTCTTAGTCCACTGTGCAAGTGCTCTGGAGAGCAATGATATAACCTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCACCTGTTGGTGACACTAACCAAAGGCTCACCTCATGGTTCCTAAGGGCACTAATCTCTAGAGCTTCAAGAATTTGCCCTGCTGCAATGAATTTCAAGGGAAGCAATACCATTCAGAGGAGGTTGATGACTGTGACAGAGCTAGCAGGGTATGTTGATCTAATCCCTTGGCATAGATTTGGATTTTGTGTATCCAATAATGAGATTTTTAAAGCAACTATGGGGTTCCAAAAGGTACATGTTCTAGATTTTAGCATAACCCCTTGTATGCAGTGGCCTACTTTTATAGATGCATTAGCTAAAAGACCTGAAGGACCTCCTTCACTTAGAATCACTGTGCCATCTTTTAGGCCACCAGTCCCTCCTTTAGTCAATATATCAATACATGAGGTTGGCTTGCGTTTAGGTAATTTTGCCAAGTTCAGGGATGTCCCTTTTGAGTTCAATGTTATTGGAAACACAACTCAATTAACATCTTCAGAATTGAGCAATGAAACAACCACCTTTCATTTTGAATCTCTGTTAAGTCTCTTGAATCCTACTATGCTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTACGTTATTTGTCTGATGAAAGAAAGGGAAGTCACCAAAACCTTTCCCTTAGGGATGCTTTTCTGAGTCTAGTAAAAGGCCTTAACCCCCAGATTGTGCTCTTGGTTGATGAGGATTGTGATCTTAGTGCATCCAGTCTCACATCAAGAATTACCTCTTGTTTCAACCATTTATGGATACCCTTTGATGCATTGGACACTTTTTTGCCTAAGGATAGTTGTCAGAGGACAGAGTTTGAATCAGATATAGGACAGAAAATTGAGAACATCATAAGCTTTGAAGGGCATCAAAGGATAGAGAGATTGGAGTCTGGGATGCAAATGTCCCAAAGAATGAAAAATGCAGGTTACTTTAGTCTTCCATTTTGTGATGAAACTGTTAGAGAAGTTAAAGCTTTGCTAGATGAACATGCTAGTGGATGGGGGATGAAAAGGGAAGAAGGTATGTTAGTTCTCACATGGAAAGGAAACAGCTGTGTGTTTGTGACAGCTTGGGTCCCCAGTGAAATGAGGGATCATCATATTGGTATGGACGCAAGTTTGTCTTAA 1356 0.4086 MKAELKGTSISFQNPTLFNTPHNPLSGALKGCLGSLDGACIEKLLVHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPAAMNFKGSNTIQRRLMTVTELAGYVDLIPWHRFGFCVSNNEIFKATMGFQKVHVLDFSITPCMQWPTFIDALAKRPEGPPSLRITVPSFRPPVPPLVNISIHEVGLRLGNFAKFRDVPFEFNVIGNTTQLTSSELSNETTTFHFESLLSLLNPTMLNLREDEALVINCQNWLRYLSDERKGSHQNLSLRDAFLSLVKGLNPQIVLLVDEDCDLSASSLTSRITSCFNHLWIPFDALDTFLPKDSCQRTEFESDIGQKIENIISFEGHQRIERLESGMQMSQRMKNAGYFSLPFCDETVREVKALLDEHASGWGMKREEGMLVLTWKGNSCVFVTAWVPSEMRDHHIGMDASLS. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05306 451 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 42 430 IPR005202 -
Seca3g05306 451 Pfam GRAS domain family 42 434 IPR005202 -
Seca3g05306 451 ProSiteProfiles GRAS family profile. 32 435 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05306 Seca-Chr3 104697479 104698834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05306 8 436 GRAS Transcription Factor Family AT3G49950 43.836 3.55e-115 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g05306 GRAS 8.5e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05306 - - gmx:100802093 805.053