Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05304 ATGGTGAAGATACTGAATGCGCGGAAGAATTCCTCAGATCGCAATCTTCTTTTGGTCTATGATTTCCTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGGTAATAAGAAGAATTCACTTGTGTTTGGTTGGACTGAGAGATATAAGGTGGCAATGGGTGTTGCTGAGGCTTTGGAGTATCTTCATAATAATGATGGACAACCTGTGAGACAAGGCACATTTTTTAGGAGAAAACCAACAGGACAACATGAGCTCTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCATTATCACACATAACGTGGACAAATGTTACTGGAACCTTTGGGTTTGTACTTTCAACTCCCACATAG 357 0.4118 MVKILNARKNSSDRNLLLVYDFLSRGSLEENLHGNKKNSLVFGWTERYKVAMGVAEALEYLHNNDGQPVRQGTFFRRKPTGQHELSDFGLAKWASTSLSHITWTNVTGTFGFVLSTPT. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05304 118 Gene3D Transferase(Phosphotransferase) domain 1 10 113 - -
Seca3g05304 118 ProSiteProfiles Protein kinase domain profile. 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05304 118 SUPERFAMILY Protein kinase-like (PK-like) 8 112 IPR011009 -
Seca3g05304 118 PANTHER OS08G0249100 PROTEIN 10 112 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05304 Seca-Chr3 104661186 104663749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05304 13 113 Receptor kinase-like Gene Family AT5G56890 39.252 2.81e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca3g05304 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05304 - - lja:Lj1g3v0268780.1 147.132