Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05301 ATGGACCCCAATTTTCAGCCCATGTTTTCCGGCGACGCTTCCACCTTCGACCCCATGTTTTCCGGCCTCAGCCTCCAATCCCTTCTCACTCTCAACCCCTCTGTCTTCGCCGACGGTTTCCCCACACTGGCCTCTCTCACCGACGACCCTTCTCCACAGAACCTTCCAGAACCCACCGACACTCTCAACGACGAGAAGCTCCTCGTTCCAAAAACTGAGCACCCCCATTTCCCCATGGAACAACAACAACAACAACACCTCCTCGTTTCCCACCACCACTCTCCTCAACCCTTCAACTTCTTCCCCAAATACCAACCCTTCCATCGTCTCCCTCATCTCCGTTCCCCGGAGTCACCGCCGCAGAAGCGCCTCCGCCATCATCTCACGGCGGATACTACTCCCCCTCCCCCTCCTTCCGCGTCGGTTCGCGGAAAAGCACCGTCGGTGATTCCTCAGAGCAACCTGGCAAGGCAGAGAAGGCAAAAGCTGAGCGAGAAGACACGGTGCTTGCAGAAGCTGATGCCATGGGACAAGAAAATGGACCAAGCAACCCTTCTAGAAGAGGCTTACAAATACGTTAAGTTCTTGCAGGCACAGTTCTGTGTTCTCCAATCCATGCCCTCCCAAACTAACCCTTACCTCGCCACCATCCATAGCAGTAACAACAACAACAATGGTGGGAATGTTTTCGGTGAGTTGGAGAGGCTGAATCGGAGCCAGGTGTTGCAGGTTCTGGTGAACTCCCCAGTGGCTCAAACCATGCTTTATTCACAAGGGTTCTGTGTTTTCTCAATGGAACAGTTGGCATTGCTCAGAAAATTATCAGAGAGGAGGCAGCAACAGCAACAGCAAATGTCTTATCATGCTTCCTCAAAAACCTTCTTCAACTGA 891 0.5264 MDPNFQPMFSGDASTFDPMFSGLSLQSLLTLNPSVFADGFPTLASLTDDPSPQNLPEPTDTLNDEKLLVPKTEHPHFPMEQQQQQHLLVSHHHSPQPFNFFPKYQPFHRLPHLRSPESPPQKRLRHHLTADTTPPPPPSASVRGKAPSVIPQSNLARQRRQKLSEKTRCLQKLMPWDKKMDQATLLEEAYKYVKFLQAQFCVLQSMPSQTNPYLATIHSSNNNNNGGNVFGELERLNRSQVLQVLVNSPVAQTMLYSQGFCVFSMEQLALLRKLSERRQQQQQQMSYHASSKTFFN. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05301 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 212 IPR036638 GO:0046983
Seca3g05301 296 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 96 274 IPR045843 GO:0003700|GO:0006355
Seca3g05301 296 SMART finulus 153 202 IPR011598 GO:0046983
Seca3g05301 296 Gene3D - 152 216 IPR036638 GO:0046983
Seca3g05301 296 MobiDBLite consensus disorder prediction 115 129 - -
Seca3g05301 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Seca3g05301 296 MobiDBLite consensus disorder prediction 109 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05301 Seca-Chr3 104599116 104600006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05301 159 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 46.667 1.22e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g05301 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05301 - - aprc:113855910 321.627