Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05294 ATGATGTTAAGGTTTCTGGAATTGAGTTCTATCTTGGAGCCTGGTAGACCACCCAAAACAGACAAGGTTGCTATATTAAGTGATGCTGTTCGAACAGTAACCCAATTAAGAAATGAAGCTGAGAAACTCAAGGAAATGAATGATGATTTACTTGAAAAAGTTAAAGAATTGAAGGTGGCTGAGAAGAATGAGCTTCGTGATGAGAAGAATAAGCTGAAGCTAGACAAAGAAAAGTTGGAGCAACAGGTCAAATTAACAAATGTACAACCCAGTTTCCTCCCTAATGCTCTGGCTGCTAAAGGGCAACCTACTAGTCACAAGCTGGTACCTTTCATTGGTTACCCTGGAATTGCCATGTGGCAGTTTATGCCTCCTGCTGCAGTTGATACATCACAGGATCATCTGCTTCGACCTCCAGTTGCCTAA 426 0.4155 MMLRFLELSSILEPGRPPKTDKVAILSDAVRTVTQLRNEAEKLKEMNDDLLEKVKELKVAEKNELRDEKNKLKLDKEKLEQQVKLTNVQPSFLPNALAAKGQPTSHKLVPFIGYPGIAMWQFMPPAAVDTSQDHLLRPPVA. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05294 141 Gene3D - 1 63 IPR036638 GO:0046983
Seca3g05294 141 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 57 IPR036638 GO:0046983
Seca3g05294 141 Coils Coil 26 89 - -
Seca3g05294 141 PANTHER BHLH TRANSCRIPTION FACTOR 4 141 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05294 Seca-Chr3 104489038 104490201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05294 4 141 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 66.438 1.07e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05294 - - gmx:100806838 189.889