Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05291 ATGGCTTCCTCAAAGCTCTTTCCAATTTCTGTTTTCTCAGTGACTTTAGCTCTCCTTCTCCAATCATCTTTTGGAGCCGACCCTCTTTTCCATTTCTGTTCAAGCTCAGAGAACTTCACAGCCCATAGCCCTTATGAATCCAATTTGAAAACCCTCATCAACTCACTTATCTACAAGACCCCTTCAACAGGCTTTGGTATGGGCTCAGTGGGCCAATACCAAAACCAACAAGCATATGGGCTTGCACTTTGCCGCGGCGATGTCTCAGCCCAAGAATGTAAAACATGTGTCTCTGAGGCTAGCAAAGAAATCCGCAATCGCTGTCCTTACAACAAAGGTGCCATCATATGGTATGATTACTGCTTGTTCAAGTACTTGGACACAGATTTCTTTGGCAAAATTGACAACACCAACAAGTTCTATATGTGGAACTTGAATAATGTTAGTGACCCTACCACATTTAACTATAAGACTAAAGAGTTATTGAGCCAGCTTTCTTACAAAGCTTATGTGAACCCAAAATTGTATGCAACCGGAGAGCTAAAGCTTGGGAAATCGGAGACACTTTATGGGTTGACTCAGTGCACGAGAGACCTTTCTAGCGTTGATTGCAAGAAGTGTCTTGATGATGCAATCAACGAACTTCCAAATTGTTGTGACGGGAAAGAAGGAGGCAGAGTTGTGAGTGGGAGCTGCAACTTCTTTACAACTCTTCTCTTCTCGCTTACCTTATCTCTCCTTCTCCAAACATCTTTTGGAGCCAATCCTATCTCATATGTTTGCTCAAGCTCTGAGAATTTCACAACTAGTTATGAATCAAACTTGAAAGCACTCATAAACTTGCTTACTGACAAGACCCCCTCAACAGGTTTTGGTATGGGCTCAGTGGGCCAAAACCAAAACGCATATGGGCTCGCTCTTTGTCGTGGCGATGTGTCAGCCTCAGAATGCAAAACTTGTGTTTCTGAGGCAACCAAAGAAATCCTCAGCCAATGCCCAAATAACAAAGGTGCCATTATATGGTATGACAATTGCTTGTTCAAGTACTTAGATGAAGATTTCTTTGGCAAGATTGACAATACCAACAAGTTCTTTACATCGAGCGGGCAAGCACCCGGTGATCCTACCACATTTAACAACATGACCAAGGACTTATTAAGCAAAATTTCCTATAAAGCTTCTATGGACCCAAAAATGTATGCAACGGGAGAACTAAATATTGGAGGATCACAAAAAGTTTATGGTTTAGCCACCAGAGACCTTTCTAGCGTTGATTGCAAGAAGTGTCTTGATGATGTAGTAAATGAGCTTCCAAATTGTTGTGATGGAAAAGTAGCAGGAAGAGTTGTCGATGGTAGCTGTAACATCCGATATGAGATTTTTCCATTTGTCAAAGAGTAA 1401 0.4176 MASSKLFPISVFSVTLALLLQSSFGADPLFHFCSSSENFTAHSPYESNLKTLINSLIYKTPSTGFGMGSVGQYQNQQAYGLALCRGDVSAQECKTCVSEASKEIRNRCPYNKGAIIWYDYCLFKYLDTDFFGKIDNTNKFYMWNLNNVSDPTTFNYKTKELLSQLSYKAYVNPKLYATGELKLGKSETLYGLTQCTRDLSSVDCKKCLDDAINELPNCCDGKEGGRVVSGSCNFFTTLLFSLTLSLLLQTSFGANPISYVCSSSENFTTSYESNLKALINLLTDKTPSTGFGMGSVGQNQNAYGLALCRGDVSASECKTCVSEATKEILSQCPNNKGAIIWYDNCLFKYLDEDFFGKIDNTNKFFTSSGQAPGDPTTFNNMTKDLLSKISYKASMDPKMYATGELNIGGSQKVYGLATRDLSSVDCKKCLDDVVNELPNCCDGKVAGRVVDGSCNIRYEIFPFVKE. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05291 466 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Seca3g05291 466 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 38-RELATED 10 237 - -
Seca3g05291 466 ProSiteProfiles Gnk2-homologous domain profile. 360 463 IPR002902 -
Seca3g05291 466 Pfam Salt stress response/antifungal 261 350 IPR002902 -
Seca3g05291 466 Pfam Salt stress response/antifungal 33 125 IPR002902 -
Seca3g05291 466 Pfam Salt stress response/antifungal 147 234 IPR002902 -
Seca3g05291 466 Pfam Salt stress response/antifungal 373 459 IPR002902 -
Seca3g05291 466 Gene3D - 26 130 IPR038408 -
Seca3g05291 466 Gene3D - 255 354 IPR038408 -
Seca3g05291 466 Gene3D - 361 463 IPR038408 -
Seca3g05291 466 Gene3D - 135 236 IPR038408 -
Seca3g05291 466 ProSiteProfiles Gnk2-homologous domain profile. 253 354 IPR002902 -
Seca3g05291 466 ProSiteProfiles Gnk2-homologous domain profile. 136 241 IPR002902 -
Seca3g05291 466 FunFam Cysteine-rich receptor-like protein kinase 10 138 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05291 Seca-Chr3 104446678 104454332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05291 269 465 Pollen Coat Proteome AT4G20670 39.904 4.84e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05291 - - gmx:100527155 426.402