Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05287 ATGTGCAAAGGAACAGAATCAAGAAAACATGGTGGTTTCTGCAGCAGCTTCCCACCTAAAGAGAGTGCTTCACCTGGAGCAACCACATGTTGTGAGCTGTGTGGTTTACAGGCTTCATTGTATTGCCAAGCTGATGGTGCATATTTATGTAGAAAATGTGATAAATGGGTTCATGGAGCCAATTTTTTGGCCTTTAGGCACATTAGGTGTTTTCTCTGCAACACATGTCAGAACCTTACACAAAGATATCTAATTGGAGCCTCAGTAGAGGTGGTTCTTCCTGCCAGCATAAGTTGGGCCAAAGGAAACCTTCCTAACAACAGCACCAACAGGAAGTGTTCAAGAATAATGCATAACAACCCTTCCATGTTCCTTTAA 378 0.4259 MCKGTESRKHGGFCSSFPPKESASPGATTCCELCGLQASLYCQADGAYLCRKCDKWVHGANFLAFRHIRCFLCNTCQNLTQRYLIGASVEVVLPASISWAKGNLPNNSTNRKCSRIMHNNPSMFL. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05287 125 CDD Bbox1_BBX-like 30 72 - -
Seca3g05287 125 SMART bboxneu5 26 72 IPR000315 GO:0008270
Seca3g05287 125 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 30 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05287 Seca-Chr3 104389716 104390093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05287 1 125 C2C2-CO-like Transcription Factor Family AT3G21890 44.615 2.94e-29 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05287 - - gmx:100500322 190.66