Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05286 ATGATCATGAAAGCATTATGTGAGTTTTGTGGGGTTGCAAGAGCTGTGGTTTACTGCAAGGCAGATTCTGCTCGTCTCTGTTTGCATTGCGATGAATGTGTACACTCTGCCAATTCTTTGTCTCGGAGGCACCCTCGTTCTCTTCTCTGTGATAAATGCAATTTTGAGTCAGCAACTGTCCTCTGCATGGATCATAAATGGTCTCTTTGTCAAGTTTGTGATTGGAATGCAAATGAATGTTCAGTATTGGGACATAGGCGTTTGGCATTGAATTTCTACACTGGTTGTCCCTCTTTGGATGAGTTTTCTAGGATTTGGCCCCATGTGGTTGATGCTAATTCGTCATGTAGTGGTTTGGAATCACTTGGTACATTGCCTAAAAATGATAGCTGCACTAGCAAGCATTTGGAGCAACTTGATGAGGTTGGTTCCTCTGGTTTGGGGAGTGACATGTTGAATGAAGTAGAACCATGCATCAAATATGAACCTTGGATGGAGCAATCTCCCATCATTCCTTCAAATCCAAACTACACACAGTATTGCAAAGATGAAGCATTTTTGTTTCCTCAAGACTTAAACCAACCAAAGCTGCAGGGATGTATTAATTTCAAGGATCTAGGATTTGATGAGGAGAATGGTCCATGTGAAGGTCTCAATGTGGATGATGTTCAATTAAACTTTGAAGGTGCTGATGAAATATTTGGCTGCTCTCAAGGTGCCTCAAGATACCACCTTGAAGATGGAGAAATAGATTGTCTATTAATGGATAGGAACTTACCAGTCACAAAATCCAGTAGTCTTATTGAGAGTGCCATGGAGGTATCATCATCAGTCCAACAAGATTGTGTGGCTTTTCCATCATCCGGGGCTGGTGGGGCTGCTAGTGTAATGCAGACCATCAACAGTAGTGCGAATTGTGCACTTATGACTCCTAGCTGCAACAGAAACATCAACCTGGGATTTCCTCCGGGCCAAATTCCTTCAAGCATGTCAATTCAAATACCCAACAATAACATTACTGTTGAAAATAATGCTACTGAATATCAAGATTGTGGGTTATCGCCATTGTTTCTGTCAGGTGAATCCCATTGGGAACCAAATTTGGAGGTTACATGCCCTCAAGCAAGGGATAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGTAAACAAATCAGATATGCATCTCGCAAAGCAAGGGCTGATACAAGAAAACGTGTGAAGGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGATCCTCTTGATACAAAGGACACCTAA 1299 0.4126 MIMKALCEFCGVARAVVYCKADSARLCLHCDECVHSANSLSRRHPRSLLCDKCNFESATVLCMDHKWSLCQVCDWNANECSVLGHRRLALNFYTGCPSLDEFSRIWPHVVDANSSCSGLESLGTLPKNDSCTSKHLEQLDEVGSSGLGSDMLNEVEPCIKYEPWMEQSPIIPSNPNYTQYCKDEAFLFPQDLNQPKLQGCINFKDLGFDEENGPCEGLNVDDVQLNFEGADEIFGCSQGASRYHLEDGEIDCLLMDRNLPVTKSSSLIESAMEVSSSVQQDCVAFPSSGAGGAASVMQTINSSANCALMTPSCNRNINLGFPPGQIPSSMSIQIPNNNITVENNATEYQDCGLSPLFLSGESHWEPNLEVTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLDTKDT. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05286 432 ProSiteProfiles Zinc finger B-box type profile. 45 90 IPR000315 GO:0008270
Seca3g05286 432 Pfam CCT motif 376 418 IPR010402 GO:0005515
Seca3g05286 432 SMART bboxneu5 2 49 IPR000315 GO:0008270
Seca3g05286 432 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 421 - -
Seca3g05286 432 CDD Bbox1_BBX-like 6 49 - -
Seca3g05286 432 ProSiteProfiles Zinc finger B-box type profile. 2 49 IPR000315 GO:0008270
Seca3g05286 432 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05286 Seca-Chr3 104384396 104388211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05286 3 426 C2C2-CO-like Transcription Factor Family AT3G21880 41.014 5.19e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g05286 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05286 - - gmx:100804738 637.491