Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05282 ATGCACGTGATGGATCAACCAAATGTAATTTCCCTGAAGCATTGCTTATTCTCTACAACAAGCAAAGGTGATCTTTTTTCAAACTTGGTCATGGAATATGTCCCTCAGACAATGTACCGAATTCTAAAGCACTACAATAGCATCAACCAAAGAATGCTCCTAATCTATGTGAAATTATATACATATCAAATCTTTAGGACACTAGCATATATCCATACTATACTTGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATATTTTGGTTGATCCCCTCACTCACCAAGTTAAGCTTTGTGATTTTGGGAGCACAAAAGTTTTGGTTAAGGGTGAATCAAACATTTCGTACATAAGTTCACGATACTATAGGGCCCCAGATCTAATATTTGGAGCGACAGAATATATAACTTCTATTGATATCTGGTCAACTGGTTGTGTCCTTGCGGAACTTCTTCTAGGCCAGCCACTGTTCCGGGGAGAAAATCAGGTGGACCAACTTGTAGAGATTATTAAGGTTCTTGGTACTCCAATTTGA 534 0.3858 MHVMDQPNVISLKHCLFSTTSKGDLFSNLVMEYVPQTMYRILKHYNSINQRMLLIYVKLYTYQIFRTLAYIHTILGVCHRDVKPQNILVDPLTHQVKLCDFGSTKVLVKGESNISYISSRYYRAPDLIFGATEYITSIDIWSTGCVLAELLLGQPLFRGENQVDQLVEIIKVLGTPI. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05282 177 Gene3D Transferase(Phosphotransferase) domain 1 34 176 - -
Seca3g05282 177 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 176 - -
Seca3g05282 177 SMART serkin_6 1 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05282 177 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Seca3g05282 177 FunFam Mitogen-activated protein kinase 34 177 - -
Seca3g05282 177 ProSiteProfiles Protein kinase domain profile. 1 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05282 177 Gene3D Phosphorylase Kinase; domain 1 3 33 - -
Seca3g05282 177 SUPERFAMILY Protein kinase-like (PK-like) 2 176 IPR011009 -
Seca3g05282 177 Pfam Protein kinase domain 2 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05282 Seca-Chr3 104320508 104324650 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05282 7 176 Core Cell Cycle Gene Families AT1G76540 32.749 7.03e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca3g05282 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05282 K14502 - cit:102626148 306.99