Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05279 ATGTCAGCTAGTGTCTCGAAGGGTAATGATGCAGTCACTGGTCACATAATATCAACCACAATCGGAGGGAAAAATGGTGAACCTAAACAGATCTTTAGGGCACTAGCATATATCCATACTGTACCTGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATATTTTGGTTGATCCCCTCACTCACCAAGTTAAGCTTTGTGATTTTGGGAGCACCTCTATTCTGTGA 225 0.4267 MSASVSKGNDAVTGHIISTTIGGKNGEPKQIFRALAYIHTVPGVCHRDVKPQNILVDPLTHQVKLCDFGSTSIL. 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05279 74 Gene3D Transferase(Phosphotransferase) domain 1 28 74 - -
Seca3g05279 74 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 30 74 - -
Seca3g05279 74 SUPERFAMILY Protein kinase-like (PK-like) 29 71 IPR011009 -
Seca3g05279 74 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Seca3g05279 74 ProSiteProfiles Protein kinase domain profile. 1 74 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05279 74 Pfam Protein kinase domain 29 72 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05279 Seca-Chr3 104237907 104239490 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05279 30 69 Core Cell Cycle Gene Families AT3G48750 55.000 5.41e-09 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca3g05279 Pkinase 5.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05279 K14502 - csin:114299076 112.079