Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05277 ATCTTTAAGGCACTAGCATATATCCATATTGTACCTGGAGTTTGCCATAGGGATGTGAAGTCTCAAAATATTTTGGTTGATCCCCTCACTCACCAAGTTAAGCTTTTTGATTTTGGGAGCGCAAAAGTTTTGGTATGTTGGTTAGCATTCTTCTTGTGCATATCACTACTTTATAGTTATACATGTATGCTACCATATTAA 201 0.3582 IFKALAYIHIVPGVCHRDVKSQNILVDPLTHQVKLFDFGSAKVLVCWLAFFLCISLLYSYTCMLPY. 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05277 66 ProSiteProfiles Protein kinase domain profile. 1 66 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05277 66 Pfam Protein kinase domain 1 44 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05277 66 Gene3D Transferase(Phosphotransferase) domain 1 1 61 - -
Seca3g05277 66 ProSitePatterns Serine/Threonine protein kinases active-site signature. 14 26 IPR008271 GO:0004672|GO:0006468
Seca3g05277 66 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 45 - -
Seca3g05277 66 SUPERFAMILY Protein kinase-like (PK-like) 1 51 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05277 Seca-Chr3 104183616 104183893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05277 1 44 Receptor kinase-like Gene Family AT5G49660 50.000 5.98e-08 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca3g05277 Pkinase 2.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05277 K14502 - zof:121975648 91.6633