Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05276 ATGGAGCCCATTTGCCCTATTGGCTTGCGTTGTGCCACTGAAATCTCTTCTCTTCTAACTTCTCCCTCACCTCTGCAAGTTCAGGAATATTATCACAACCTTTTGTCTGCAAGGCAGTGCAGTGGCATCACAGTCAAACATGATGGGAACTTTGGAAAGGGTGTATATGCTACCATGGACTTTAAAGAGGGGGAACTTGTTCTGAAGGATCACATGCTTGTGGGGGCTCAACATTCTTTCAACAAGATTGATTGTTTTGTCTGTAGCTTCTGCTTTCGTTTTATTGGTTCCATAGAACTTCAAATTGGAAGGAGGCTTTACTTGCAAGAATTAAGGGCCAATGAGAGCCATGGTTGTGATGTGGGAAACTTTTCAGGCTCTTCTAAAGGCTGCCATGAAATGGATTCATCTGATGAAGAGGAGAGCACTCAGCAATGTGGTTCTAGTAGTTCCAAAACTAAAGTTCCTCTCCCTGAAGGTGTTGTGGAATCATTGATGAATGGCCAGTTGATATTGCCTTCCTCTGAGAAGTTCTCTTTGCCGCCAGCCGTTCCATGCCATGGTGGATGTGGAGAAGCTTACTATTGCAGCACGTCATGCGCAGAGGCTGATTGGGAATCCTCCCATTCTTTACTCTGTACTGGCGAGGGTTCTGATACTGCACATAGGGGGGCACTCCTCAAATTCATCAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAGGCAATTTCTTCTACCATATTAAGGTACCGCAGGATAAAAGCAAACTGTCTTGAAGATCAAGTAAAATATGAAACATCCTGTGATCCAAACCAATGTAATCTCTCTCTTCTTTTGGAAGCTTGGAGGCCTATATCAATGGGACACAAGAAAAGGTGGTGGGACTGCATTGCATTGCCAGATGATATTGATTCTTCTGATGAAGCTTCATTCAGGATGCAAATAAAAGAGCTGGCATTGGAGTCTCTCCAACTTCTTAAGACAGCTATATTTGACAAGGAATGTGAGCCATTATTCTCCCTTGAAATTTATGGACACATCATTGGCATGTTTGAGCTGAATAATCTCGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATACATTGATGATATGACAGATCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCAATTCTCGACGCTCTTGGTGAAGACTATTCTATTTGTTGTCAAGGAACTGCATTTTTTCCTCTGCAAAGCTGCATGAACCATTCCTGTTGTCCTAACGCCAAAGCTTTCAAAAGAGATGAGGATAGAGATGGCCAAGCAACAATAATTGCACAGAGGTCCATTTGTAAAGGAGAAGAGGTTGGTTTATGCCAATATCTAATATACCAATAA 1386 0.4192 MEPICPIGLRCATEISSLLTSPSPLQVQEYYHNLLSARQCSGITVKHDGNFGKGVYATMDFKEGELVLKDHMLVGAQHSFNKIDCFVCSFCFRFIGSIELQIGRRLYLQELRANESHGCDVGNFSGSSKGCHEMDSSDEEESTQQCGSSSSKTKVPLPEGVVESLMNGQLILPSSEKFSLPPAVPCHGGCGEAYYCSTSCAEADWESSHSLLCTGEGSDTAHRGALLKFIKHANETNDIFLLAAKAISSTILRYRRIKANCLEDQVKYETSCDPNQCNLSLLLEAWRPISMGHKKRWWDCIALPDDIDSSDEASFRMQIKELALESLQLLKTAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDMTDPDKEEAEKITQPILDALGEDYSICCQGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIAQRSICKGEEVGLCQYLIYQ. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05276 461 MobiDBLite consensus disorder prediction 130 155 - -
Seca3g05276 461 SUPERFAMILY HIT/MYND zinc finger-like 188 214 - -
Seca3g05276 461 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 455 IPR044237 GO:0008168
Seca3g05276 461 Pfam SET domain 52 452 IPR001214 GO:0005515
Seca3g05276 461 SUPERFAMILY SET domain 41 452 IPR046341 -
Seca3g05276 461 ProSiteProfiles SET domain profile. 41 457 IPR001214 GO:0005515
Seca3g05276 461 MobiDBLite consensus disorder prediction 141 155 - -
Seca3g05276 461 Gene3D - 127 217 - -
Seca3g05276 461 Pfam MYND finger 185 213 IPR002893 -
Seca3g05276 461 Gene3D SET domain 363 455 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05276 Seca-Chr3 104146245 104151817 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca3g05276 SET 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05276 - - gmx:100803651 789.26