Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05273 ATGAGAGTTGTTATTGTCACAAGAACAAACCAATTTTTCATTGAAGTAGGTAGCCAAGAAACAGTGGTTGAAATCAAAAGAAAAATAGAACAAATCCAAGGTGTTCCAGTGGCTTCACAAATCCTCACAGTTTCTGGGTGGGAACTAGTGGATGGATTGGACATGGAAGATTATCCAATAGTCACTGAAGGCACAAAAATTGACCTTACCATCAAAACAGTGGAGCCACATCTCAATAATCATCCTAACAAAATGCAAATCATAGTAAAATTTTCAGCTAGACGGATTCACATAGAGGTGGACCGAACAGATACTGTTCGCAGCTTGAAGGAAAAAATTCACATAATTGATAGCACACCCATCAAAAGAATGACCCTTTTCTTTTCAGGGATTGAATTGGATGAAGACTTCAGAAACCTGTATGAGTATGGTATTCGTGAATTTTCTGAGATTGTTGTGTTCCTCAAGACCATGAATCGGTCAAGAGATGAACCTCCCACAAGGAAGTTAAGCTTGGTGGTACAAACTTCCTCTAGTTTGCTTAATGCAGCAACCATTCCATTGGAGATGAGAGATGCAAACACTGTTAATGACTTGAAGCAGTTGTTGCTAAGCAGAAAAATTCTGCCAGTTGATGACTATTTGTTTATACACAGACAGAGAATCATGCGTGATAGTTGCAGCCTCCGTTGGCATGGAGTTGAAAATGGGGACTGTCTATATGTGTTTAAAGGGACTGTTAGCCGCAATGGGTATGCCTGA 762 0.3976 MRVVIVTRTNQFFIEVGSQETVVEIKRKIEQIQGVPVASQILTVSGWELVDGLDMEDYPIVTEGTKIDLTIKTVEPHLNNHPNKMQIIVKFSARRIHIEVDRTDTVRSLKEKIHIIDSTPIKRMTLFFSGIELDEDFRNLYEYGIREFSEIVVFLKTMNRSRDEPPTRKLSLVVQTSSSLLNAATIPLEMRDANTVNDLKQLLLSRKILPVDDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSRNGYA. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05273 253 Pfam Ubiquitin family 7 72 IPR000626 GO:0005515
Seca3g05273 253 Pfam Ubiquitin family 87 157 IPR000626 GO:0005515
Seca3g05273 253 CDD Ubl_ubiquitin_like 185 243 - -
Seca3g05273 253 Gene3D - 84 156 - -
Seca3g05273 253 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 72 - -
Seca3g05273 253 SUPERFAMILY Ubiquitin-like 1 77 IPR029071 -
Seca3g05273 253 SUPERFAMILY Ubiquitin-like 181 245 IPR029071 -
Seca3g05273 253 ProSiteProfiles Ubiquitin domain profile. 85 160 IPR000626 GO:0005515
Seca3g05273 253 SUPERFAMILY Ubiquitin-like 78 158 IPR029071 -
Seca3g05273 253 Gene3D - 1 69 - -
Seca3g05273 253 SMART ubq_7 85 156 IPR000626 GO:0005515
Seca3g05273 253 SMART ubq_7 1 72 IPR000626 GO:0005515
Seca3g05273 253 SMART ubq_7 170 245 IPR000626 GO:0005515
Seca3g05273 253 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Seca3g05273 253 ProSiteProfiles Ubiquitin domain profile. 170 242 IPR000626 GO:0005515
Seca3g05273 253 Gene3D - 169 245 - -
Seca3g05273 253 CDD Ubl_ubiquitin_like 87 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05273 Seca-Chr3 104128881 104129642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05273 85 156 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.616 8.18e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05273 - - gmx:100781557 428.328