Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05271 ATGGCTGACATGCGTCTCTCTTCTGACTCAAATTCTAGAGAGCAATCCAGACAAGTTTCCAAGGTTGAATTTTCTGAAGATGAGGAAACTCTTATTATCAGGATGTATAAACTGGTAGGGAATAGGTGGCCTTTAATTGCTGGAAGAATTCCTGGAAGAACAGCTGAGGAAATAGAGAAGTATTGGACTTCAAGATACTCAAGTAGAAGAAGTTAG 216 0.3935 MADMRLSSDSNSREQSRQVSKVEFSEDEETLIIRMYKLVGNRWPLIAGRIPGRTAEEIEKYWTSRYSSRRS. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05271 71 Gene3D - 23 69 - -
Seca3g05271 71 FunFam MYB-like transcription factor 23 65 - -
Seca3g05271 71 Pfam Myb-like DNA-binding domain 21 63 IPR001005 -
Seca3g05271 71 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 70 IPR017930 -
Seca3g05271 71 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g05271 71 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 18 69 - -
Seca3g05271 71 SUPERFAMILY Homeodomain-like 21 66 IPR009057 -
Seca3g05271 71 MobiDBLite consensus disorder prediction 1 18 - -
Seca3g05271 71 CDD SANT 23 62 IPR001005 -
Seca3g05271 71 ProSiteProfiles Myb-like domain profile. 16 66 IPR001005 -
Seca3g05271 71 SMART sant 20 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05271 Seca-Chr3 104118350 104119035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05271 16 69 MYB Transcription Factor Family AT5G14750 50.000 3.94e-16 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g05271 Myb_DNA-binding 2.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05271 - - ming:122091983 106.686