Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05267 ATGAACGACCTCCTTACTGATTCATTTGTTAGTGAGGCTAATCATGGTCAGCCTTCCAGACAAAGTGATATTGAAATGGGAATGCAGGTTCAAAGAAGCCACTCTGATATGGGAATGGATGCTTTTAATAAGCAGATCCAAGATGCTGATAAACAAATTGATAAGCTGTCTGGGCTACTTCAAAAGCTAAAGGAAGCTAACGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCACATGGTGTCAAAGCAAAAATAGAAGCTATAAACAGAGATAACCTAAACAATAGACAAAAGCCTGGCTGTGAGAAGGGAACGGGTATTGACAGAGCAAGGATGAATATGACAAATGCCTTGACTAAGAAGTTCAAGGATCTCATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAAAGAAGAGTTATTACAGTCACGGGAACTAGACCAGATGATGAGACAATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAAGGCAATTCTTGAAGCAGGCCGAGGACAGGTTGTAAGCACGGTAGAAGAAATTCAGGAGAGACATGATGCTGTAAAAGAAATTGAGAAAAAACTTCTTGATTTACATCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGATATTCATCTTCGCGCTTACTCTCCTGTGCGTCACTGTTCCATGA 804 0.3943 MNDLLTDSFVSEANHGQPSRQSDIEMGMQVQRSHSDMGMDAFNKQIQDADKQIDKLSGLLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKAKIEAINRDNLNNRQKPGCEKGTGIDRARMNMTNALTKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQKAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQIFIFALTLLCVTVP. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05267 267 CDD SynN 39 196 IPR006011 GO:0016020
Seca3g05267 267 Gene3D - 35 240 - -
Seca3g05267 267 SUPERFAMILY t-snare proteins 36 255 IPR010989 GO:0016020|GO:0016192
Seca3g05267 267 SMART SynN_4 34 160 IPR006011 GO:0016020
Seca3g05267 267 Coils Coil 39 76 - -
Seca3g05267 267 SMART tSNARE_6 204 261 IPR000727 -
Seca3g05267 267 FunFam Syntaxin 132 34 163 - -
Seca3g05267 267 CDD SNARE_syntaxin1-like 208 254 - -
Seca3g05267 267 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Seca3g05267 267 MobiDBLite consensus disorder prediction 1 25 - -
Seca3g05267 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 254 IPR000727 -
Seca3g05267 267 PANTHER SYNTAXIN 38 254 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05267 Seca-Chr3 104029734 104035543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05267 1 254 SNARE and Associated Proteins AT3G03800 61.811 3.06e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05267 K08486 - gmx:100800991 451.44