Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05260 ATGCCAGCTGGTATTATGATTCCGGCGAGAAACATGCCCTCCATGATTGGAAGAAACGGCACCGTTGGTGGATTTGGATTATCTTCAGGACTCTCTCTTGGTCAGCAGCCAAACCTAATGGAAGGTGGTCATCTCCTCCCACTGGATCACATGGCTCAGAACACAACCTCAGAGAGTGATATCCCCAGAATCCGTGAAGATGAGTTCGTTGACAGTGCCACAAAGTCAGGTAGTGAAAACCAGGAAGGTGCTTCAGGTGAAGACCAAGACCCTCGTCCCAATAAGAAGAAGCGTTACCACCGCCACACACAGCATCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGTCCGCACCCTGATGACAAGCAAAGGAAGGAACTGAGCCGAGAGTTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACCCAACATGAGAGGCATGAGAACACACAGCTTAGAACTGAGAATGAGAAGCTTCGTGCGGATAACATGAGGTTCAGGGAAGCTCTTAGCAATGCCTCTTGTCCTAATTGTGGTGGACCAACAGCTATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTCGAAAATGCTCGCCTAAGAGAAGAGATTGATAGGATTTCTGCCATTGCTGCCAAGTATGTAGGAAAGCCTGTGGGAAGCTATCCACTTCTTTCATCACCTTCATCTGTTCCTCCTCGTCCTCTTGAGCTTGGGATAGGTGGTGGTTTTGGTGGCCAACCTGGAGGAGGCATTGGTGGTGGAGATATGTATGGAGCTGGAGATCTTCTTAGGTCAATTAGTGGACCCACTGAAGCTGATAAACCAATAATAATTGAGCTAGCTGTTGCAGCTATGGAGGAGCTAATTGGAATGGCACAAATGGGTGAGCCACTTTGGTTAACCACCTTGGATGGCACAACCACTGTGCTCAATGAGGATGAATACATCAGGTCCTTTCCTAGAGGAATTGGACCAAAGCCTGCTGGATTCAAGTGTGAAGCTTCAAGAGAAACCGCTGTTGTCATCATGAATCATGTTAGCCTTGTTGAGATTCTCATGGACACGAATCAATGGTCCACAGTGTTCTCTGGAATAGTCTCAAGAGCAATGACTCTAGAAGTGCTATCAACTGGTGTGGCGGGGAACTATAATGGCGCATTGCAAGTGATGACAGCAGAACTTCAAGTACCTTCACCTCTTGTGCCAACCCGAGAGAGCTATTTTGTAAGGTATTGTAAGCAACATGCTGATGGGACTTGGGCAGTGGTTGATGTGTCTTTGGATAATTTGCGCCCTAGTCCTTCTGCCAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCTAAGGTGATATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCATAGTCTCTACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCTTAGATCGTCAATGTGAAAGGCTTGCTAGTGCCATGGCTACAAACATTCCCACCGTAGATGTTGGGGTGATAACAAACCAAGATGGGAGGAAGAGTATGTTGAAACTGGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCTTCTACTGCTCATACATGGACAACACTTTCTGGGACTGGTGCTGATGATGTAAGGGTCATGACCCGTAAGAGTGTAGATGACCCTGGAAGGCCTCCTGGTATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCAGTTCCACCAAAAAGAGTTTTTGAATTCCTCCGAGATGAGAACTCTAGAAGTGAGTGGGATATCCTTTCCAATGGAGGAGTTGTCCAAGAAATGGCACATATTGCTAACGGCCGAGATACCGGGAATTGTGTCTCTCTTCTTCGAGTTAATAGTGCCAATTCAAGTCAAAGCAACATGTTGATATTACAAGAGAGTTGCACCGACTCAACAGGCTCTTTTGTTATATATGCTCCTGTAGACATTGTAGCAATGAATGTGGTTCTAAATGGAGGGGACCCAGATTATGTAGCCCTTCTCCCTTCAGGGTTTGCTATACTCCCAGATGGGACCACATCACATGGTGGTGGCATTGGTGAAACTGGACCTTGTGGATCTCTCTTGACTGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACTGCCAAGCTTTCTCTTGGATCTGTTGCTACAGTTAACAATCTCATTGCATGCACTGTTGAGAGAATCAAGGCTTCACTATCTGGTGAAGTTGCTTGA 2313 0.46 MPAGIMIPARNMPSMIGRNGTVGGFGLSSGLSLGQQPNLMEGGHLLPLDHMAQNTTSESDIPRIREDEFVDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVGSYPLLSSPSSVPPRPLELGIGGGFGGQPGGGIGGGDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTTTVLNEDEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHVSLVEILMDTNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHSLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSHGGGIGETGPCGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA. 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05260 770 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Seca3g05260 770 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 94 765 IPR042160 -
Seca3g05260 770 FunFam Homeobox-leucine zipper protein GLABRA 2 291 510 - -
Seca3g05260 770 SUPERFAMILY Bet v1-like 531 762 - -
Seca3g05260 770 CDD homeodomain 96 154 IPR001356 GO:0003677
Seca3g05260 770 ProSiteProfiles START domain profile. 282 514 IPR002913 GO:0008289
Seca3g05260 770 Gene3D - 81 170 - -
Seca3g05260 770 FunFam Homeobox-leucine zipper protein HDG1 82 169 - -
Seca3g05260 770 MobiDBLite consensus disorder prediction 72 104 - -
Seca3g05260 770 SUPERFAMILY Homeodomain-like 85 153 IPR009057 -
Seca3g05260 770 Coils Coil 159 179 - -
Seca3g05260 770 SMART HOX_1 94 157 IPR001356 GO:0003677
Seca3g05260 770 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Seca3g05260 770 CDD START_ArGLABRA2_like 286 510 - -
Seca3g05260 770 SUPERFAMILY Bet v1-like 282 513 - -
Seca3g05260 770 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Seca3g05260 770 Pfam START domain 292 511 IPR002913 GO:0008289
Seca3g05260 770 SMART START_1 291 511 IPR002913 GO:0008289
Seca3g05260 770 Gene3D - 342 508 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05260 Seca-Chr3 103645375 103652017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05260 64 770 Homeobox Transcription Factor Family AT1G05230 79.775 0.0 1159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g05260 START 9.1e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05260 K09338 - gmx:100809556 1376.69