Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05257 ATGGAGGTTCTCTGGGTCAGGGCGTTGTTTCTCTTGGTTTTCTGCTTGTGGAATCCCATGGAAGTGGTGGGAAGGACAGGGATTACCATGGTGAACTCTACTGTTCCTTCAAGAGCCAATGTTTTGAGAATTGGAGCGCTGTTTACTTTTGATTCTGTAATTGGAAGATCAGCTAAACCTGGAATCTTGGCTGCAATTGAAGATGTTAATGCTAATAAGAGCATTCTCCCTGGCGTTACGCTGGAATTGATTTTACATAATACTAACTGCAGTCCGTTTCTTGGAACAGTTGAAGCTTTGCAGTTGATGGAGAATGAAATCGTTGCTGCAATTGGTCCACTGTCCTCTGGAGTAGCTCACGTCATCTCTCATGTTGTTAATGAGCTCCATGTACCTCTTCTTTCATTTGGGGCAACAGACCCTTCTCTATCTTCTCTGCAGTACCCATATTTTGTCCGCACCACCCACAGTGACTATTTTCAGATGTATGCAATTGCTGACTTAGTTGACTATTATAGATGGAGGGAAGTAATTGCCATTTTTGTAGATGATGATAATGGAAGGAATGGGATTGCAGCACTAGGAGATGCTCTTGCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTCCCTCCTGGAGCCTCAAAGAATGATATCAGTGACTTGTTAAATGGAGTAAACTTAATGGAATCACGGGTCTATGTTCTTCATGTTAATCCTGATTCTGGTTTGTCAGTTTTTTCTATTGCCAAGAAGCTTGGAATGATGACCAGCGGCTATGTATGGATTGCAACAGATTGGCTTCCTTCAGTTTTGGATTCAATGGAGTCAGTGGACACTAACACAGTAAATATGCTACAAGGGGTTGTGGCTTTGCGTCATCACACTCCTGATACTAATCTCAAAAAGCGTTTTTTCTCTAGGTTGAAGAAACTTCAAGGCATGGAGAATGCAAGCTTCAACTCTTATGCATTATATGCATATGATTCTGTTTGGTTAGCAGCACATGCTCTTGATACTTTTCTTAAAGAAGGTGGAAACATTTCTTTCTCCACTGATCCTAAGTTGCATGACACAAATGGAAGCATGTTGCATTTATCATCACTTCGTGTTTTTGATGGTGGTCCATTGTTTCTCCCAACAATTTTGAGAATGAACTTCACTGGTATAAGTGGTCAAATTCAGTATGATATGGAAAAGAATCTAATTCATCCTGCTTATGATATCTTGAACATTGGTGAATCTGGATCCAGGAGAATTGGTTATTGGTCTAATTACTCTGGTCTGTCAGTTTTACCTCCTGAAATTTTGTATAAGAAACCACCTAACACTTCAACAATCAATCAAAAACTTTACAGTGTTTTGTGGCCTGGAGAAACTACAGCTACACCAAGAGGGTGGGTGTTCCCCAACAATGGAAAGCCACTTCGAATAGCAGTGCCTCACCGAATTAGCTACTTGGAGTTTGTTGCTAAAGACAAGAACCCTCCTGGAGTAAGAGGCTTTTGTATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTCCCACGACAATATATATTATATGGAAATGGTGAAAGAAATCCCAACTATAATGAACTTGTCAATCAGGTTGCACTAAATAACTATGATGCAGCTGTTGGAGATGTCACAATTGTTCCAAACAGGACAAGAGTTTTGGATTTCACTCAACCTTTCATGGAATCAGGGCTGGTAGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGCCCGTGGGCTTTCCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTCTTTCTTTTTGTGGGAGCTGTTGTATGGATTCTTGAGCACCGGCACAATCCAGAGTTTCGTGGTAAACCGAAGAAACAACTTATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGTATGTGCTCCATACATTCGGCTGTAATAGTCCTTATTTTGTATGGTACAGGAGAGAACACTGTGAGTGGTCTTGGGCGATTGGTGCTAATCATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTGTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGAATTCAAGAAGGGTCATTTGCACGGAAGTATCTGATAGATGAACTCAATATACAAGAATCTAGGATAGTTACACTGAAAGATCAGCAGGCATATGTTGATGCCCTCACGCGTGGACCAAAAGGAGGAGGGGTCGTGGCCATTGTTGATGAGCTTCCTTATATTGAGCTCTTCATGTCCAATACCAACTGTAAGTTCAGAACTGTTGGGCAGGAGTTCACAAAAAGTGGTTGGGGATTTGCATTCCAAAGGGACTCTCCCCTTGCTGTTGATATGTCAACTGCAATTCTTCAACTTTCTGAGAATGGTGACCTGCAAAAGATCCATGACAAATGGCTTTTAAAACATGAATGTAGCACACAACTGGATGATGTTGATTCAAATAAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTTTCCTTGCTTTGATTATATTCTTTGTTAGAGTGTTCTGTCAATATATGAAATTCAGCCCACAGCCTGAGGAAGTTGATGAGGAAATTCAACCAGTCAGTTCTAGAAGGACTCTCAGAACTCCAAGCTTCAAGGACTTGATTGAGTTTGTGGATAAGAGAGAAAAAGAAATCAAAGAGATACTTAGGCAGAAGAGTAAAAAAAGGAGGCGCAGCCAGAGTTTAGATGGCCAATCTAGTTCACCCACCTAA 2853 0.4101 MEVLWVRALFLLVFCLWNPMEVVGRTGITMVNSTVPSRANVLRIGALFTFDSVIGRSAKPGILAAIEDVNANKSILPGVTLELILHNTNCSPFLGTVEALQLMENEIVAAIGPLSSGVAHVISHVVNELHVPLLSFGATDPSLSSLQYPYFVRTTHSDYFQMYAIADLVDYYRWREVIAIFVDDDNGRNGIAALGDALAKKRAKISYKAAFPPGASKNDISDLLNGVNLMESRVYVLHVNPDSGLSVFSIAKKLGMMTSGYVWIATDWLPSVLDSMESVDTNTVNMLQGVVALRHHTPDTNLKKRFFSRLKKLQGMENASFNSYALYAYDSVWLAAHALDTFLKEGGNISFSTDPKLHDTNGSMLHLSSLRVFDGGPLFLPTILRMNFTGISGQIQYDMEKNLIHPAYDILNIGESGSRRIGYWSNYSGLSVLPPEILYKKPPNTSTINQKLYSVLWPGETTATPRGWVFPNNGKPLRIAVPHRISYLEFVAKDKNPPGVRGFCIDVFEAAINLLPYPVPRQYILYGNGERNPNYNELVNQVALNNYDAAVGDVTIVPNRTRVLDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGKPKKQLMTVFWFSFSTMFFSHSMCSIHSAVIVLILYGTGENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFARKYLIDELNIQESRIVTLKDQQAYVDALTRGPKGGGVVAIVDELPYIELFMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKHECSTQLDDVDSNKLSLSSFWGLFLICGIACFLALIIFFVRVFCQYMKFSPQPEEVDEEIQPVSSRRTLRTPSFKDLIEFVDKREKEIKEILRQKSKKRRRSQSLDGQSSSPT. 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05257 950 PIRSF IGluLR_plant 3 950 IPR017103 -
Seca3g05257 950 CDD PBP1_GABAb_receptor_plant 43 432 IPR044440 -
Seca3g05257 950 Coils Coil 918 938 - -
Seca3g05257 950 Gene3D - 64 405 - -
Seca3g05257 950 FunFam Glutamate receptor 157 317 - -
Seca3g05257 950 Pfam Bacterial extracellular solute-binding proteins, family 3 532 836 IPR001638 -
Seca3g05257 950 Pfam Ligand-gated ion channel 837 868 IPR001320 GO:0015276|GO:0016020
Seca3g05257 950 SUPERFAMILY Periplasmic binding protein-like II 452 837 - -
Seca3g05257 950 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Seca3g05257 950 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 55 71 - -
Seca3g05257 950 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 115 143 - -
Seca3g05257 950 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 905 IPR015683 -
Seca3g05257 950 FunFam Glutamate receptor 472 588 - -
Seca3g05257 950 Gene3D - 589 729 - -
Seca3g05257 950 SMART GluR_14 478 837 IPR001320 GO:0015276|GO:0016020
Seca3g05257 950 SUPERFAMILY Periplasmic binding protein-like I 37 468 IPR028082 -
Seca3g05257 950 Gene3D - 730 839 - -
Seca3g05257 950 Gene3D - 472 588 - -
Seca3g05257 950 Pfam Receptor family ligand binding region 60 413 IPR001828 -
Seca3g05257 950 FunFam Glutamate receptor 731 839 - -
Seca3g05257 950 CDD GluR_Plant 475 835 - -
Seca3g05257 950 MobiDBLite consensus disorder prediction 931 950 - -
Seca3g05257 950 Gene3D - 157 430 - -
Seca3g05257 950 FunFam Glutamate receptor 588 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05257 Seca-Chr3 103518485 103522900 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05257 38 802 Ion Channels AT1G05200 66.667 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05257 K05387 - gmx:100799912 1469.52