Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05254 ATGGAGGTTCTCTGGGTCAGGGAGTTGTTTCTCTTGGTTTTCTGTTTGTGGAATCCCATGGAAGTGGTGGGAAGGACAGGGATTACCATGGTGAACTCTACTATTCCTTCAAGAGCCAGTGTTTTGAGAATTGGAGCGCTGTTTACTTTTGATTCTGTAATTGGAAGATCAGCTAAACCTGGAATCTTGGCTGCAATTGAAGATGTTAATGCTAATAAGAGCATTCTCCCCGGCGTTACGCTGGAATTGATTTTACATAATACTAACTGCAGTCCGTTTCTTGGAACAGTGGAAGCTTTGCAGTTGATGGAGAATGAAATTGTTGCTGCAATTGGTCCACTGTCCTCTGGAGTAGCTCATGTCATCTCTCATGTTGTTAATGAACTCCATGTTCCTCTTCTTTCATTTGGGGCAACAGACCCTTCTCTATCTTCTCTGCAGTACCCATATTTTGTCCGCACCACCCACAGTGACTATTTTCAGATGTATGCAATTGCTGACTTAGTTGACTATTATAGATGGAGGGAAGTAATTGCCATTTTTGTAGATGATGATAATGGAAGGAATGGGATTGCATCACTAGGAGATGCTCTTGCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTCCCTCCTGGAGCCTCAAAGAATGATATCAGTGACTTGTTGAATGGATTTTCTCTATTGCCAAGAAGCTTGGAATATGTATGGATTGCAACAGATTGGCTTCCTTCAGTGTTGGATTCAATGGAGTCAGTGGACACTAACACAGTAAATATGCTACAAGGGGTTGTGGCTTTGCGTCATCACACTCCTGATACTAATCTCAAAAAGCGTTTTTTCTCTAGGTTGAAGAAACTTCAAGGCATGGAGAATGCAAGCTTCAACTCTTACGCATTATATGCATATGATTCTGTTTGGTTAGCAGCACATGCTCTTGATACTTTTCTTAAAGAAGGTGGAAACATTTCTTTCTCCTCTGATCCTAAGTTGCATGACACAAATGGAAGCATGTTGCATTTATCATCACTTAGCGTTTTCGATGGTGGTCCATTATTTCTCCCAACAATTTTGAGAATGAACTTCACTGGTATGAGTGGTCAAATTCAGTTTGATATGGAAAAGAATCTAATTCATCCTGCTTATGATATCTTGAACATTGGTGAATCTGGATCCAGGAGAATTGGTTATTGGTCTAATTACTCTGGTCTATCAGTTTTACCTCCGGAAAATTTGTATAAGAAACCACCTAACACTTTACCAAACAAGTTTAATTAA 1281 0.4012 MEVLWVRELFLLVFCLWNPMEVVGRTGITMVNSTIPSRASVLRIGALFTFDSVIGRSAKPGILAAIEDVNANKSILPGVTLELILHNTNCSPFLGTVEALQLMENEIVAAIGPLSSGVAHVISHVVNELHVPLLSFGATDPSLSSLQYPYFVRTTHSDYFQMYAIADLVDYYRWREVIAIFVDDDNGRNGIASLGDALAKKRAKISYKAAFPPGASKNDISDLLNGFSLLPRSLEYVWIATDWLPSVLDSMESVDTNTVNMLQGVVALRHHTPDTNLKKRFFSRLKKLQGMENASFNSYALYAYDSVWLAAHALDTFLKEGGNISFSSDPKLHDTNGSMLHLSSLSVFDGGPLFLPTILRMNFTGMSGQIQFDMEKNLIHPAYDILNIGESGSRRIGYWSNYSGLSVLPPENLYKKPPNTLPNKFN. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05254 426 FunFam Glutamate receptor 61 183 - -
Seca3g05254 426 Gene3D - 270 380 - -
Seca3g05254 426 Pfam Receptor family ligand binding region 235 388 IPR001828 -
Seca3g05254 426 Pfam Receptor family ligand binding region 60 224 IPR001828 -
Seca3g05254 426 Gene3D - 157 225 - -
Seca3g05254 426 CDD PBP1_GABAb_receptor_plant 43 407 IPR044440 -
Seca3g05254 426 Gene3D - 64 156 - -
Seca3g05254 426 Gene3D - 235 405 - -
Seca3g05254 426 PANTHER OS06G0188250 PROTEIN 235 383 - -
Seca3g05254 426 SUPERFAMILY Periplasmic binding protein-like I 37 405 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05254 Seca-Chr3 103481684 103483755 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05254 9 420 Ion Channels AT2G32390 55.656 4.01e-168 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05254 K05387 - gmx:100799912 607.06