Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05252 ATGGTGGGTAACTTCAAATCCGGGTCAAGTATGAAGCTGTCTATGGTTCTGTACCTTGTGGTTTTGATTTGGGCAATCCTCCTTTGCGGTATTGCTCATAGCGGAAGGCCTGCCAGTGTGAACATTGGTGCAATTTTCACCTTCGATTCGGTCATAGGTAAAGCTGCGAAGGCAGCTATGGAAATGGCTGTTTCTGATGTCAATTCGGACCCAAAAGTTCTCAACGGGACGGAGCTCAAGTTGATAATGAGCGATGGCATGTGCAATGCCTTTCTGGGATCAACAGGAGCTTTTCAGATACTTGAGCAAGGGGTTGCAGCCATAATTGGCCCACAGTCATCTGCCATGGCTCATACAATTTCCCAAATTGCTGATGCTGTCCAGGTTCCTCTTATTTCATATGCTGCCACTGATCCAACACTATCCTCCCTTCAGTTTCCTTTATTTTTTCGTACTATACAAAGTGACTTGGAGCAAATGACCGCAATGGCCAACCTAATTGATTTTTATGGATGGAAAGAGGTCATTGCTGTATACTTGGATGATGATTATGGAAGAAATGGAATATCTGCTTTGGGTGATGAACTTGAAGAAAGGAGATTGAAAATTGCTCACAAACTACCTTTGAGTATTCAGTTTGATCTGGATGAAGTCACTGACTTGCTCAATCAATCCAAAATGTTCGGCCCTCGAGTGTATGTTGTTCATGTAAACCCAGATCCGAGATTGAGAATTTTTTCAGCTGCCCACAAACTTCAAATGATGGCCAATAACTATGTCTGGCTTGCCACAGATTGGCTCTCTGCTACCCTAGATTCATTATCCCCAGTGAATCAGACCTCTCTCAGTGTTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTCCAGATTCTAGGAAAAAAAGAGCTTTTGTTTCTCGATGGACAAAAATGCAAAAAGAAGGTGTAGCTAATACTAGTTTGAACTCCTATGGATTTTATGCTTATGATACAGTTTGGGCAGTTGCACTTTCAATTGACAAATTTATAGAACTACATAATAATATTACCTTCTTGCTTCATGATAATAATAAGCTGCCTCAAACAGAAGGAATTGGTATTCAGCTTGAGAAGCTCAAAGTCTTTGTTGGTGGATCTGATCTGGTCAACATATTATTAAAATCAAATTTTACAGGTGTGAGTGGTCAACTTCAGTTTAATCCAGACAGAAATATCATAAGTGGTGGTTATGATGTTATCAATATCAATCAGATGGAAATTACTACGGTTGGTTATTGGTCTAGTTATTCGGGATTTTCAGTTGTGCCCCATGAAGTTCTTAAAAGAAAAGAACATAGCAGGATTTCCCAATATCAGAAGCTTGATAATATTACTTGGCCAGGTGGGAAGACTGAAAGACCACGTGGCTGGGTGATTGCTGATAATGCAAAGCCACTGAGAATTGGAGTCCCAAAGAGAGCAAGTTTTGTTGAATTTGTAACTGAACTGCAAGATAGTCATCAAATGCAGGGGTACTGCATTGATATCTTCAAGAAAGCCCTCGAATTTATTCCATATGATGTTCCTTATGCATTCAAGCCTGTTGGGAATGGTAAAGCAAATCCCAATTATGATGCACTTGTGAAAATGATTGATGACAATATATATGATGCAGTTGTTGGAGACATCGCAATTGTAACAAACCGTACAAAAATTGTGGATTTTTCTCAGCCTTTTGCATCATCAAGCCTTGTTATAGTGGCTCCTATCAACAGTGTAAGATCAAATTCTTGGGTGTTCCTCAAACCATTCACGGCAGATATGTGGTGTGTCATTGCTGCATCATTTATGATGATTGGAGTGGTTATATGGATTCTTGAGCACCGAGTCAATGATGACTTCCGGGGTCCTCCTAAGAGGCAACTTGTGACAATGTTTATGTTCAGCCTCTCAACACTGTTTAAGACAAATCAGGAGAAGACAGTAAGCTCACTTTCTAAAATGGTGATGATCGTCTGGCTTTTTCTACTGATGGTGATCACAGCTAGCTATACAGCAAGTTTGACTTCAATTCTTACAGTGGAGCAGCTTTCATCGCCCATCACAGGAATTGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGGTCATTTGCTTACAGCTATCTGACAGATAATCTCTATGTACCAAGTTCGAGACTTGTTTCCTTAGGCTCCCCTGAGGAGTATGCTGTAGCGCTGCGGAATGGGCCATCTGGTGGAGGGGTGGCAGCTGTCATTGATGAGCTTCCATATGTGGAGTTATTTCTATCAAAAGAAACTGATTTTGGTATTATTGGACAGCCATTTACCAGAAGCAGTTGGGGATTTGCTTTTCAAAGAGACTCTCCTCTTGCCCTTGACATGTCCACAGCAATTTTGAAACTCTCTGAGAGTGGAGAGCTTCAAAAGATACATGAGAAGTGGTTCTGTAAGATGGGTTGTCCTGGAGAAAGGAAAAGCAATCCTAAGCCTGATCAACTTCATTTGGTTAGCTTTTGGGGACTATATCTCTCATGTGGTGTTGTCTCTCTCGCTGCACTTGTGCTGTTTCTGCTACGAATGATTTGCCAATATGCCCGCTTCAAACAAAGACAAAAGGATGTTGCTTCTTCATCCTCAGAATCATCAAGTAGTCATTGTTCCCAGGTGGTTGTAAACTTCTTCAACTTCATTGATGAGAAGGAAGAGGCCATCAAGAAAATGTTCACTCCATGTGACAATCGTCACAACCCCAACTGA 2769 0.4124 MVGNFKSGSSMKLSMVLYLVVLIWAILLCGIAHSGRPASVNIGAIFTFDSVIGKAAKAAMEMAVSDVNSDPKVLNGTELKLIMSDGMCNAFLGSTGAFQILEQGVAAIIGPQSSAMAHTISQIADAVQVPLISYAATDPTLSSLQFPLFFRTIQSDLEQMTAMANLIDFYGWKEVIAVYLDDDYGRNGISALGDELEERRLKIAHKLPLSIQFDLDEVTDLLNQSKMFGPRVYVVHVNPDPRLRIFSAAHKLQMMANNYVWLATDWLSATLDSLSPVNQTSLSVLQGVVGLRQHIPDSRKKRAFVSRWTKMQKEGVANTSLNSYGFYAYDTVWAVALSIDKFIELHNNITFLLHDNNKLPQTEGIGIQLEKLKVFVGGSDLVNILLKSNFTGVSGQLQFNPDRNIISGGYDVININQMEITTVGYWSSYSGFSVVPHEVLKRKEHSRISQYQKLDNITWPGGKTERPRGWVIADNAKPLRIGVPKRASFVEFVTELQDSHQMQGYCIDIFKKALEFIPYDVPYAFKPVGNGKANPNYDALVKMIDDNIYDAVVGDIAIVTNRTKIVDFSQPFASSSLVIVAPINSVRSNSWVFLKPFTADMWCVIAASFMMIGVVIWILEHRVNDDFRGPPKRQLVTMFMFSLSTLFKTNQEKTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVPSSRLVSLGSPEEYAVALRNGPSGGGVAAVIDELPYVELFLSKETDFGIIGQPFTRSSWGFAFQRDSPLALDMSTAILKLSESGELQKIHEKWFCKMGCPGERKSNPKPDQLHLVSFWGLYLSCGVVSLAALVLFLLRMICQYARFKQRQKDVASSSSESSSSHCSQVVVNFFNFIDEKEEAIKKMFTPCDNRHNPN. 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05252 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 53 69 - -
Seca3g05252 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 113 141 - -
Seca3g05252 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Seca3g05252 922 Pfam Bacterial extracellular solute-binding proteins, family 3 490 819 IPR001638 -
Seca3g05252 922 Gene3D - 767 826 - -
Seca3g05252 922 SUPERFAMILY Periplasmic binding protein-like II 458 819 - -
Seca3g05252 922 Gene3D - 58 408 - -
Seca3g05252 922 Pfam Ligand-gated ion channel 820 851 IPR001320 GO:0015276|GO:0016020
Seca3g05252 922 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 878 IPR015683 -
Seca3g05252 922 SMART GluR_14 478 821 IPR001320 GO:0015276|GO:0016020
Seca3g05252 922 FunFam Glutamate receptor 474 590 - -
Seca3g05252 922 Gene3D - 474 591 - -
Seca3g05252 922 Pfam Receptor family ligand binding region 57 416 IPR001828 -
Seca3g05252 922 PIRSF IGluLR_plant 10 921 IPR017103 -
Seca3g05252 922 FunFam Glutamate receptor 716 823 - -
Seca3g05252 922 FunFam Glutamate receptor 155 316 - -
Seca3g05252 922 Gene3D - 155 432 - -
Seca3g05252 922 Gene3D - 592 717 - -
Seca3g05252 922 CDD GluR_Plant 477 819 - -
Seca3g05252 922 FunFam Glutamate receptor 590 727 - -
Seca3g05252 922 SUPERFAMILY Periplasmic binding protein-like I 35 471 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05252 Seca-Chr3 103452513 103458421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05252 36 920 Ion Channels AT2G32400 56.404 0.0 1032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05252 K05387 - gmx:100796389 1502.26