Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05234 ATGGCAAGAATGATCTCCAACAACAACACCAACAATGAGGCTGATAGTAATGCATCAACTGATGAGGGTGAGTCAAGAGGTCGTATGAAAAAGGGGCCTTGGACCCCAAAAGAAGATAAGATTTTGATAGAGTATGTGAAAAAATATGGTGAAGGGAATTGGAACTCTGTTCAGAAGAATTCTGGGTTGTTAAGGTGTGGTAAAAGTTGCAGACTTAGATGGGCCAATCATCTCAGGCCTAATCTGAAGAAAGGCGCATTTTCTCAAGAAGAAGAAAAAATTATCATTGACCTTCATGCTAAGCTTGGAAACAAATGGGCTCGAATGGCCTCACAGTTACCTGGGAGGACCGACAATGAAATAAAGAACTTTTGGAATACTCGAATGAAAAGGCTCCAAAGAGCAGGGTTACCCCTTTATCCCCCAAAAGTTCATATTGAAGCCAATGCATACCATCAACATCTACAGCAACAACACCACCACTTGGAGAAACCTTACCCTTCTTCAGCTTTATCATCATTTTCTTTACTCTTATCTTCTTATTATCCCAAGAAGCTCAATGATTCAAGCCATTATTCTGCTACAAACCCTCTAAAAACTCATCCTAATTCTACTAATTATTACACTGATCCATCCCAACAGTTCAAGCTTTCCAATGAAAATAGAGGGAATAGGAATCTTGCTTTGCCATTGTCCACTGTCTCTCCATATGGACCTTCATCCTTGACTCTTTTAAACCAAAATTTTGTCGCTCATGATTCAGCTCCAATTGATCATGATTCACATGACTACCAATGTTTTGGAAGCTATAATCTTGGACTCATTTCCAAATCTCCATATGAACCCCTTCCCAATTTGGTGCTAGGCTCCGGTAATGAAATCTCTTCGAGTCAAATTACAACACTTGGCCCAACAACTCCTACTTCATCCAATGCTAGTGGTGTTGATGGCTTCATGGGAGGTTTAAGCATGGTTAATGACTATAATGAAGTTGCGTCGTTATCTCCTCAAAGAAATAGCGGTCTATTAGATGCGTTAGTAGAGGAGGCTAAAAGTCTTTCTCGTAAAGACAAGTCTAAGAGTGAGGATTCGATTGTAGCAGGGAATTTATCTTATAAAAGGAAAAACATGATGAGTGAGGAATATGCAAAGGATGAAGACATTGTGCTTGTTGCGTCAGTTATGAAGAACAATGGGGACATTGCTAATGAAAACCAAAGGGATGAATTTAACTCTTCTCAATTGTCAACAGGGAAGAAACGAATTGGCGAGGATCTGTTGGAGGAGATGAATTCCATGGATGATGATGACTTGTTTAGCTTGCTCAACAATTTTCCCTCTGAAATGCCAATGCCAGGGTGGTACCGTAGAGGAGAAAGTCAGTCATTGGGACTTGAAACTCAACCCGATGCTTCTTCACCTGGACCTACTCATCAAGATTTTGCTTGGACTCTCGAGACTTGCTGGAACAATACGCCCGACATATGCTAA 1491 0.4058 MARMISNNNTNNEADSNASTDEGESRGRMKKGPWTPKEDKILIEYVKKYGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGAFSQEEEKIIIDLHAKLGNKWARMASQLPGRTDNEIKNFWNTRMKRLQRAGLPLYPPKVHIEANAYHQHLQQQHHHLEKPYPSSALSSFSLLLSSYYPKKLNDSSHYSATNPLKTHPNSTNYYTDPSQQFKLSNENRGNRNLALPLSTVSPYGPSSLTLLNQNFVAHDSAPIDHDSHDYQCFGSYNLGLISKSPYEPLPNLVLGSGNEISSSQITTLGPTTPTSSNASGVDGFMGGLSMVNDYNEVASLSPQRNSGLLDALVEEAKSLSRKDKSKSEDSIVAGNLSYKRKNMMSEEYAKDEDIVLVASVMKNNGDIANENQRDEFNSSQLSTGKKRIGEDLLEEMNSMDDDDLFSLLNNFPSEMPMPGWYRRGESQSLGLETQPDASSPGPTHQDFAWTLETCWNNTPDIC. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05234 496 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Seca3g05234 496 FunFam MYB-related transcription factor 30 83 - -
Seca3g05234 496 FunFam Transcription factor MYB97 86 163 - -
Seca3g05234 496 SUPERFAMILY Homeodomain-like 28 125 IPR009057 -
Seca3g05234 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 78 IPR017930 -
Seca3g05234 496 MobiDBLite consensus disorder prediction 19 34 - -
Seca3g05234 496 SMART sant 83 131 IPR001005 -
Seca3g05234 496 SMART sant 30 80 IPR001005 -
Seca3g05234 496 MobiDBLite consensus disorder prediction 1 34 - -
Seca3g05234 496 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Seca3g05234 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Seca3g05234 496 Gene3D - 30 83 - -
Seca3g05234 496 MobiDBLite consensus disorder prediction 1 18 - -
Seca3g05234 496 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 9 462 - -
Seca3g05234 496 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Seca3g05234 496 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Seca3g05234 496 CDD SANT 33 78 IPR001005 -
Seca3g05234 496 CDD SANT 86 127 IPR001005 -
Seca3g05234 496 Gene3D - 86 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05234 Seca-Chr3 103080674 103084171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05234 6 153 MYB Transcription Factor Family AT5G06100 67.785 3.48e-68 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g05234 Myb_DNA-binding 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05234 K09422 - gmx:100784779 529.25