Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05233 ATGGCGAGAATGAACTCCAACAACAACAGCAACAATGAGGCCATAGAGGCTAACAGTAACACATTAACAGATGATGGTGATTCTAGAGGTCACAGAAAAAAGGGGCCTTGGACGCCACAAGAAGATAAGATTTTGATCGAGTACGTGAATAAGCATGGTGAAAGGAATTGGAACGCTGTGCAGAAGAATTTCGGGTTATCAAGGTGTGGAAAAAGTTGCAGACTTAGGTGGGCGAATCATCTAAGGCCCAATCTAAAGAAAGGATCTTTTTCTCAAGAAGAAGAAACAATCATCGTTGATCTTCATGCCAAAATTGGAAACAGATGGGCTCGAATGGCCTCACAGGTATTACCTGGAAGGACCGACAATGAAATAAAGAACTTTTGGAATACAAGAATGAAAAGGAGACAAAGAGAAGGGTTACCCCTTTATCCCCCTGAAGTCTATGCAGAAGCAAATGCATACCATCAACTTCTTCGCCAGCAGCAACACCAGTCGGGACCATCTTTATCATCATTTTCTTTACTCTTATCTTCTTGTTACCCAAAGAAGCTCGATGAGCCAAGCCATTACTCAACTATGAAAAACCACCCTGATTTTGCTAATTATTACACCAATCCATCCCAACAGTTCAAGCATTCCAACGAAAAAAAAGAGAATGAAAATCTCACTTTCCCGTTCTCCCCCCTCTCTCCATATGGATCTTCATCGTTGACTCACAACCAAAGTTTTGCTGCTCATAATGCAACCCCAAATCATGATTCATATGATTTTCAATATTCTAGAAGCTATGATCATGGCATCAATGCAGGATCTCCATATGAAACCCTTCCTAATTTGATGCCAGGTTCCACCACTGAGATCTCTTTGAGCCAAATAGCTCCCAACTTAGCAACTCCTTCTTCATCCAATGTTAGTGGTGTTGATGGATTCATAGGAGCTTCAAGCATCGCTAATGACTATAATGAAGTTATGTCATTATCTCCTCAAGGAAACAGTGGTTTGTTGGATGCTTTAGTGGAGGAAGCAAAATATATTTCTCGTAAAGACAAGTCCAAGAGTGAGGATTCAATTGTACCAACGAAGTTATGTTATAAGAGGAAAAGCATGGCCAGTGAGGAAAATACGAAGGACGAAGACTCTGTGCTAGTTGCGTCAGTCATGAAAAACAATGGGGACGTTAAGGAAAACCAGAAGGATGAATTTATCCCTTCTCAATTATCAACAGGAAAGAAACCAATTGGTGAGGATCCGTTGGAAGAGATAAAATCCATGGATTATGATGACGACTTGTTTAGCTTGCTCAATAATTTTCCCTCAGAAATGCCTGTGCCAGAGTGGTACCGTAAAGGAGAAAGTCAGTCACTGGGACTTGAAACTCAACTTGATGCTTCTTCACCTAGCCCCACTCATCAAGAGTTTGCCTGGACTCTTGGAACTTCCTGGAACAATGCACCTGGCATATGCTAA 1470 0.4136 MARMNSNNNSNNEAIEANSNTLTDDGDSRGHRKKGPWTPQEDKILIEYVNKHGERNWNAVQKNFGLSRCGKSCRLRWANHLRPNLKKGSFSQEEETIIVDLHAKIGNRWARMASQVLPGRTDNEIKNFWNTRMKRRQREGLPLYPPEVYAEANAYHQLLRQQQHQSGPSLSSFSLLLSSCYPKKLDEPSHYSTMKNHPDFANYYTNPSQQFKHSNEKKENENLTFPFSPLSPYGSSSLTHNQSFAAHNATPNHDSYDFQYSRSYDHGINAGSPYETLPNLMPGSTTEISLSQIAPNLATPSSSNVSGVDGFIGASSIANDYNEVMSLSPQGNSGLLDALVEEAKYISRKDKSKSEDSIVPTKLCYKRKSMASEENTKDEDSVLVASVMKNNGDVKENQKDEFIPSQLSTGKKPIGEDPLEEIKSMDYDDDLFSLLNNFPSEMPVPEWYRKGESQSLGLETQLDASSPSPTHQEFAWTLGTSWNNAPGIC. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05233 489 CDD SANT 36 81 IPR001005 -
Seca3g05233 489 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Seca3g05233 489 CDD SANT 89 131 IPR001005 -
Seca3g05233 489 MobiDBLite consensus disorder prediction 202 226 - -
Seca3g05233 489 MobiDBLite consensus disorder prediction 1 24 - -
Seca3g05233 489 Gene3D - 89 136 - -
Seca3g05233 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 137 IPR017930 -
Seca3g05233 489 ProSiteProfiles Myb-like domain profile. 82 133 IPR001005 -
Seca3g05233 489 SMART sant 33 83 IPR001005 -
Seca3g05233 489 SMART sant 86 135 IPR001005 -
Seca3g05233 489 MobiDBLite consensus disorder prediction 1 38 - -
Seca3g05233 489 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Seca3g05233 489 Pfam Myb-like DNA-binding domain 87 131 IPR001005 -
Seca3g05233 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 85 IPR017930 -
Seca3g05233 489 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 10 456 - -
Seca3g05233 489 Gene3D - 33 86 - -
Seca3g05233 489 FunFam MYB-related transcription factor 33 86 - -
Seca3g05233 489 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05233 Seca-Chr3 103016656 103019898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05233 6 157 MYB Transcription Factor Family AT5G06100 69.032 2.78e-65 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g05233 Myb_DNA-binding 3.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05233 K09422 - gmx:100798860 509.605