Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g05232 | ATGAACTCCAACAACAATAGCAACAATGAGGCCATAGAGGCTGACAGTAACACATTAACAGATGATGGTGATTCTATAGGTCACATGAAAAAGGGGCCTTGGACCCCACAAGAAGATAAGATTTTGATCGAGTACATGAATAAGCATGGATCTTTTTCTCAAGAAGAAGAAACAATCATCGTTGATCTTCATGCCAAAATTGGAAACAAATGGGCTCGAATGGCCGCACAGTGCAATCATTTTGGTTTCAAAAGTGAACTTCGATTAGTTTGTTGTACCAATGATGGAATTGTGTTGTCTTCTGACGTGGATCGTCGACTGTGA | 324 | 0.4012 | MNSNNNSNNEAIEADSNTLTDDGDSIGHMKKGPWTPQEDKILIEYMNKHGSFSQEEETIIVDLHAKIGNKWARMAAQCNHFGFKSELRLVCCTNDGIVLSSDVDRRL. | 108 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g05232 | 107 | SUPERFAMILY | Homeodomain-like | 29 | 78 | IPR009057 | - | |
| Seca3g05232 | 107 | ProSiteProfiles | Myb-like domain profile. | 26 | 75 | IPR001005 | - | |
| Seca3g05232 | 107 | CDD | SANT | 33 | 86 | IPR001005 | - | |
| Seca3g05232 | 107 | Gene3D | - | 52 | 89 | - | - | |
| Seca3g05232 | 107 | Gene3D | - | 25 | 51 | - | - | |
| Seca3g05232 | 107 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Seca3g05232 | 107 | PANTHER | TRANSCRIPTION FACTOR MYB33-RELATED | 48 | 77 | - | - | |
| Seca3g05232 | 107 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g05232 | Seca-Chr3 | 103009443 | 103010035 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g05232 | 3 | 77 | MYB Transcription Factor Family | AT5G06100 | 38.739 | 1.10e-15 | 69.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g05232 | K09422 | - | gmx:100784779 | 72.7886 |