Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05231 ATGAAAAAGGGGCCTTGGACCCCACAAGAAGATAAGGTTTTGATCGAGTACGTGAATAAGCATAATGAAAGGAATTGGAACGCTGTGCAGAAGAATTTCGGGTTATTAAGGTGTGGAAAAAGTTGCAGACTTAGGTGGGCTAATCATCCAAGGCCTAATCTAAAGAAAGGATCTTTTTCTCAAGAAGAAGAAACAATCATCATTGATCTTCATGCCAAAATTGGAAACAAATGGGCTCGAATGGCCTCACAAGTATCTCTTATAGCTTACCTATGGCTATTTTCTTCAATATATAAAATAATAATATCAATGTTTACAAGAAATATATATATATATCGAGTTTTTTATTATCTTATTGGTCTATGTACATGTCCTTATGATTTTCTTTATTATGCTTACTTTGTTCCATGGTTTTTAGTGCAATCATTTTGA 432 0.3333 MKKGPWTPQEDKVLIEYVNKHNERNWNAVQKNFGLLRCGKSCRLRWANHPRPNLKKGSFSQEEETIIIDLHAKIGNKWARMASQVSLIAYLWLFSSIYKIIISMFTRNIYIYRVFYYLIGLCTCPYDFLYYAYFVPWFLVQSF. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05231 143 Pfam Myb-like DNA-binding domain 56 85 IPR001005 -
Seca3g05231 143 Pfam Myb-like DNA-binding domain 3 49 IPR001005 -
Seca3g05231 143 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 84 - -
Seca3g05231 143 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Seca3g05231 143 SMART sant 55 97 IPR001005 -
Seca3g05231 143 SMART sant 2 52 IPR001005 -
Seca3g05231 143 Gene3D - 55 88 - -
Seca3g05231 143 ProSiteProfiles Myb-like domain profile. 51 85 IPR001005 -
Seca3g05231 143 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Seca3g05231 143 CDD SANT 5 49 IPR001005 -
Seca3g05231 143 SUPERFAMILY Homeodomain-like 4 80 IPR009057 -
Seca3g05231 143 Gene3D - 2 54 - -
Seca3g05231 143 FunFam MYB-related transcription factor 2 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05231 Seca-Chr3 102995476 102995907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05231 1 85 MYB Transcription Factor Family AT2G32460 80.000 1.43e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g05231 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05231 K09422 - gmx:100798860 155.221