Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05230 ATGGCGAGATTGAACTCCAACAGCAATAGAAACAATGAGGCCATAGAGGCTGACAGTAACACATTAACACATGATGGTGATTCTAGAGGTCACATGAAAAAGGGGCCTTGGACCCCACAAGAAGATAAGATTTTGATCGAGTACGTGAATAAGCATGATGAAAGGAATTGGAACGCTGTGCAGAAGAATTTCGGGTTATTAAGGTGTGGAAAAAGTTGCAGACTTAGGTGGGATAATCATCTAAAGCCCAATCTAAAGAAAGGATCTTTTTCTCAAGAAGAAGAAATAATCATCGTTGATCTTCATGCCAAAATTGGAAACAAATGGGCTCGAATGGCCTCACAGTGCAATCATTTTGGTTTCAAAAAAGAACATCGATTAGTTTGTTGTACCAGTGATGGAATTGTGTTGTCTTCTGACATGGATCGTCGACTGTGA 438 0.3995 MARLNSNSNRNNEAIEADSNTLTHDGDSRGHMKKGPWTPQEDKILIEYVNKHDERNWNAVQKNFGLLRCGKSCRLRWDNHLKPNLKKGSFSQEEEIIIVDLHAKIGNKWARMASQCNHFGFKKEHRLVCCTSDGIVLSSDMDRRL. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05230 145 SMART sant 33 83 IPR001005 -
Seca3g05230 145 SMART sant 86 126 IPR001005 -
Seca3g05230 145 MobiDBLite consensus disorder prediction 1 37 - -
Seca3g05230 145 CDD SANT 36 81 IPR001005 -
Seca3g05230 145 Gene3D - 33 85 - -
Seca3g05230 145 Gene3D - 86 127 - -
Seca3g05230 145 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Seca3g05230 145 Pfam Myb-like DNA-binding domain 37 96 - -
Seca3g05230 145 MobiDBLite consensus disorder prediction 1 19 - -
Seca3g05230 145 FunFam MYB-related transcription factor 33 86 - -
Seca3g05230 145 MobiDBLite consensus disorder prediction 20 37 - -
Seca3g05230 145 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 16 115 - -
Seca3g05230 145 SUPERFAMILY Homeodomain-like 35 111 IPR009057 -
Seca3g05230 145 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05230 Seca-Chr3 102990085 102990692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05230 32 116 MYB Transcription Factor Family AT2G32460 78.824 8.48e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g05230 Myb_DNA-bind_6 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05230 K09422 - gmx:100798860 157.918