Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05227 ATGCAAAGTGTGAATAAAAATGTGTTCATCAGCTGCTTTAATCAGTGTGCTCAGAAATTGCTGGAGCTACATCTCGCTTCTGGCTTCAGAAAGTACCTTTTCTGGTTCAAAGGCAAATTACAAGGGAGCCATACTGCTCTAGTTCAAGAAGGCAAAGATCTGATTACTTATGCACTGATAAATGCCATTGCAATTCGAAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAGGTCCAGAGTATGCACAAGGAAATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATTAATTTAAGGGAAACCAAGGTCAAGTCAAGGAAGGCACCTGCTTTATTTGATGGACGTTCCCTCACATTTAAGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCTATCAAAATTGATATTGACTTGACTTGTTCTTTTTGCTTGGACACAGTGTTTGATCCAGTTTCACTGACTTGTGGCCATATATTCTGCTATACTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTGATGGACTTATGGCAGCAAATTCTAAAGAGAAATGTCCTTTATGCCGAGAGGTGTATGCAAATCACATTAGTAACTCATGA 645 0.3891 MQSVNKNVFISCFNQCAQKLLELHLASGFRKYLFWFKGKLQGSHTALVQEGKDLITYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAPALFDGRSLTFKDGKPSLTCELFDSIKIDIDLTCSFCLDTVFDPVSLTCGHIFCYTCACSAASVSIVDGLMAANSKEKCPLCREVYANHISNS. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05227 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 10 209 IPR033326 -
Seca3g05227 214 Pfam Zinc finger, C3HC4 type (RING finger) 152 206 - -
Seca3g05227 214 SMART ring_2 155 203 IPR001841 -
Seca3g05227 214 ProSiteProfiles SPX domain profile. 1 86 IPR004331 -
Seca3g05227 214 ProSiteProfiles Zinc finger RING-type profile. 155 204 IPR001841 -
Seca3g05227 214 SUPERFAMILY RING/U-box 148 207 - -
Seca3g05227 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 214 IPR013083 -
Seca3g05227 214 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05227 Seca-Chr3 102955040 102956929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05227 152 204 C3H Transcription Factor Family AT4G28270 39.655 5.19e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05227 K16275 - gmx:100797432 365.54