Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05217 ATGATGAAGAAGACGATGAAACCTCAAGGAAAAGGCTTAGGCTCACAAAAAAATCAGTCAATTATTCTTGAAGAAAGCTTCAAAGAGCACAACACTGTTAACCGTTTGGCACTCGCAAAGCAGTTGGGCCTTCGAGCACGACAAGTAGAGGTGTGGTTCCAAAACAAAAGGGCAAGGACAAAGCTAAAGCACACAAAGGTGGATTGTGAATTCTTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAACCAGGAGGTTGCAGAAGGAAGTTCAGTAG 276 0.4384 MMKKTMKPQGKGLGSQKNQSIILEESFKEHNTVNRLALAKQLGLRARQVEVWFQNKRARTKLKHTKVDCEFLKRCCENLTEETRRLQKEVQ. 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05217 91 Coils Coil 69 89 - -
Seca3g05217 91 PRINTS Lambda-repressor HTH signature 34 43 IPR000047 GO:0003677
Seca3g05217 91 PRINTS Lambda-repressor HTH signature 43 59 IPR000047 GO:0003677
Seca3g05217 91 ProSitePatterns 'Homeobox' domain signature. 38 61 IPR017970 GO:0000981|GO:0006355
Seca3g05217 91 Gene3D - 16 61 - -
Seca3g05217 91 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 17 91 - -
Seca3g05217 91 Pfam Homeodomain 17 61 IPR001356 GO:0003677
Seca3g05217 91 ProSiteProfiles 'Homeobox' domain profile. 35 63 IPR001356 GO:0003677
Seca3g05217 91 SMART HOX_1 9 67 IPR001356 GO:0003677
Seca3g05217 91 CDD homeodomain 17 64 IPR001356 GO:0003677
Seca3g05217 91 SMART halz 63 91 IPR003106 GO:0006355|GO:0043565
Seca3g05217 91 SUPERFAMILY Homeodomain-like 16 71 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05217 Seca-Chr3 102574699 102575170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05217 17 90 Homeobox Transcription Factor Family AT4G16780 79.221 4.73e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca3g05217 Homeodomain 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05217 K09338 - gmx:547858 137.117