Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05216 ATGGAGTGGATTAGAGGCACCACCATAGGACATGGCTCTTCAGCCACCGTCTACCTTGCTACCTCTCGCCGCTCCACCACCGAACTCTCCGCCGTGAAATCAGCGGAGCTATCACTATCACAGTCACAACAGCTGCAGAGAGAACAGAGGATTCTGTCTACTCTGTCTTCTCCTCACATAGTTAGCTACAAAGGATGTGACATTACCAAAGAAAGCAACAAGCTTTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGCACTCTCTCTCAGGAAACTCGCCGGCGCGGTGGCCGGCTCGATGAGCCGGCGATCGCACAGTACACGTGGCAAGTGTTGCAGGGGTTAGAGTATTTGCATTCAAACGGTGTCGTACATTGTGATATAAAGGGTAGCAACATATTGATTGGTGAAGATGGAGCTAAAATTGGAGACTTTGGATGTGCCAAGCTTGTTACTGACCCGGTGGCGCCGATCGCCGGAACGCCGATGTTCATGGCACCGGAGGTGGCGCGTGGGGAAGAACAAGGGTGCCCTTGTGATGTTTGGGCACTTGGGTGTACTGTCGTTGAAATGGCTACTGGGTTTGCGCCATGGCCTAATGTGGAAGACCCTGTTATGGTTCTGTATCGTGTAGCATATTCTGGTGAGGTTCCTGAGATTCCTTGTTTTCTTTCTGATGAAGCAAAGGATTTCTTGGGGAAGTGTTTTAGAAGGAATCCGAAGGAGAGGTGGAGTTGTAATCAATTGCTGAAGCATCCATTTCTTGCTGAATTCAATTCCAATTGTAAGGAAATTGAGGACTCTAATAATTCAAGTTCACCAACTAGTATTCTTGAACAAGGCTTTTGGAATTCTGTGGAAGAGTCAGAATCAGAATGCTTGTTTCTTGGGAATTTGGATCAGACAAGTTTTGAGATTGAGAATTCGCCTGCTGGTAGGATCAGAAGGCTAGCTTTGTGTTCAGGGGATCCCAATTGGACATGGGGTGATGAGGATTGGATCATAACTAGAGGCAATGAAGCAGGGGTTTCAACTAGTGATGATGTGCAAGAAAGCAATGTTAGTGGTAGAATTAGTTGTTATATTTGTGAGGATTATTGTAAATGTAGGGATTGTGTTAGTGTTGTAGTTAATAGTCTCAATTTTGAGAGAGGTGTTGTTGCTGAGATGCTGCTTCCTTCAACATTAGATATTTTATAA 1203 0.4564 MEWIRGTTIGHGSSATVYLATSRRSTTELSAVKSAELSLSQSQQLQREQRILSTLSSPHIVSYKGCDITKESNKLWFNLFMEYMPFGTLSQETRRRGGRLDEPAIAQYTWQVLQGLEYLHSNGVVHCDIKGSNILIGEDGAKIGDFGCAKLVTDPVAPIAGTPMFMAPEVARGEEQGCPCDVWALGCTVVEMATGFAPWPNVEDPVMVLYRVAYSGEVPEIPCFLSDEAKDFLGKCFRRNPKERWSCNQLLKHPFLAEFNSNCKEIEDSNNSSSPTSILEQGFWNSVEESESECLFLGNLDQTSFEIENSPAGRIRRLALCSGDPNWTWGDEDWIITRGNEAGVSTSDDVQESNVSGRISCYICEDYCKCRDCVSVVVNSLNFERGVVAEMLLPSTLDIL. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05216 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Seca3g05216 400 SUPERFAMILY Protein kinase-like (PK-like) 3 295 IPR011009 -
Seca3g05216 400 Gene3D Transferase(Phosphotransferase) domain 1 2 302 - -
Seca3g05216 400 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Seca3g05216 400 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 291 - -
Seca3g05216 400 FunFam Mitogen-activated protein kinase kinase kinase 17 2 314 - -
Seca3g05216 400 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05216 400 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05216 400 Pfam Protein kinase domain 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05216 400 CDD STKc_MAPKKK 2 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05216 Seca-Chr3 102571003 102572205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05216 1 356 MAP Kinase Kinase Kinase AT2G32510 48.780 6.10e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca3g05216 Pkinase 2.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05216 K20716 - gmx:100797801 558.14