Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05213 ATGGCCAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCTTCCACCACAACCCAATAGTTCTCAACTCTTTTCCTGAAGACACCAACATCAAGTGGAAACTAATTGGTCCCAAAATGGATGCCACCAAGAACAAGTCTTCTCCACCCACTACTCCAACCAGAACAACCTCCACCCTCCCTTTCCAAGTCAACCTTAGCTGCTCCCCTCCACCTTCCTCTCATGATAAGAGACCTCTCATCGATGCAATGGACCTCTTCCCTAACAAAGATAACAACCACCTTGCCTCTGCCTCTGCCTCTGCCTCTACCTCTGCACCTCCTTCACTTCACCTTCATCATAAACCTGATCATCATTGCCCCACTACTCCTATTTTGGAATTGAAAGTAAACACTGGTCTGAATCTTCATTTCACCAACACTAACAGTGATCAATCCATGGTGGAGGATGACATATCACCTAATTTACAAGACAGACAAACTATGATTGAGCTAGCTGCTCTTCAAGATGAGCTTGAAAGAGTGAAGGTGGAGAATAATCGGCTGAGGAACATGCTTGAACAGGTTAACAACAATTACCAAGCCCTGCAGATGCATTTGGTGAGTGTGATGCAGGGTCACAAGGTTGAGGAGGGTGAAGAGAAACAACAGCAAGTGTTTGATGGAAAATCAGAAGAGGAGAAACAAATTGGGAATGACGGAGCTTTGGTTCCAAGACAGTTTATGGATCTTGGATTGGCTACTAATGCAGATAATGATGAACCTTCTCATTCTTCATCTATAGGAAGGAGTCAGGACCATTTAAAGTCACCCACTAATAATGTAGAAGTAGCTTCCAAGGAACTAAGCACAAGAAAGAATGAGAATACTAGTGATGAAGCACAAGTGTTTGATCAAGACAAAGAAGATAGTCTCCCAGGTTTAGCTGCTAATAATGTTCCAAAGTTTAGTCCTTCTAGAAATGTTGAGCAAGCTGAGGCTACCATGAGGAAAGCAAGAGTTTCTGTTAGAGCCAGATCAGAGGCAGCAATGATAACTGATGGATGTCAATGGAGAAAGTATGGTCAGAAAATGGCCAAAGGAAACCCATGTCCAAGAGCATATTACAGATGCACCATGGCTGCCGGTTGCCCAGTAAGAAAGCAGGTACAAAGGTGTGCTGAAGACAGAACAATACTAATCACAACATATGAAGGAAATCACAGCCACCCTTTGCCTCCTGCAGCTATGGCAATGGCACAAACAACTTCCTCAGCTGCAAGAATGCTTCTTTCAGGATCAATGTCAAGTGCTGATGGACTAATGAATGCAAACTTCCTCACAAGGACACTCCTTCCTTGCTCTTCTAGCATGGCAACTATCTCAGCATCAGCTCCATTCCCAACTGTTACATTGGATTTGACACAGTCTCCAAACCCATTACAGTTCCCAAAGCCTCAAAGCCAGTTCCAAATCCCCTTCCCTTGTGTCCCTCAGAATTTCACAAACTCCCCAGCTTCATTACTGCCTCAGATATTTGGTCAGGCATTGTATAATCAGTCAAAGTTTTCTGGGCTTCAAATGTCACAAGATGTTGCAGACCCTTCCCAATTGGGTAATCAATCACAACAGGCACAACCACCACAGCTTGCTGACACATTTAGTGCTGCCACTGCTGCTATTGCAGCTAACCCAAACTTCACTGCAGTTCTAGCAGCAGCTATCACTTCCATTATTGGGGGCACACAGCCAAATAACAATAACAGTACCAGTAATAATAATAATGGCAACACTACTGCCAATAACAACAATGGCAATAGTACATCAAGCAACAACAATAGCAACGGAAGCAATAAAATCAACAATTCCAATTTGAACTAG 1869 0.4366 MARGGGLSIDSDPIGSFFHHNPIVLNSFPEDTNIKWKLIGPKMDATKNKSSPPTTPTRTTSTLPFQVNLSCSPPPSSHDKRPLIDAMDLFPNKDNNHLASASASASTSAPPSLHLHHKPDHHCPTTPILELKVNTGLNLHFTNTNSDQSMVEDDISPNLQDRQTMIELAALQDELERVKVENNRLRNMLEQVNNNYQALQMHLVSVMQGHKVEEGEEKQQQVFDGKSEEEKQIGNDGALVPRQFMDLGLATNADNDEPSHSSSIGRSQDHLKSPTNNVEVASKELSTRKNENTSDEAQVFDQDKEDSLPGLAANNVPKFSPSRNVEQAEATMRKARVSVRARSEAAMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHSHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPQSQFQIPFPCVPQNFTNSPASLLPQIFGQALYNQSKFSGLQMSQDVADPSQLGNQSQQAQPPQLADTFSAATAAIAANPNFTAVLAAAITSIIGGTQPNNNNSTSNNNNGNTTANNNNGNSTSSNNNSNGSNKINNSNLN. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05213 622 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 141 593 IPR044810 GO:0003700
Seca3g05213 622 MobiDBLite consensus disorder prediction 254 283 - -
Seca3g05213 622 MobiDBLite consensus disorder prediction 212 235 - -
Seca3g05213 622 MobiDBLite consensus disorder prediction 94 120 - -
Seca3g05213 622 FunFam probable WRKY transcription factor 31 333 410 - -
Seca3g05213 622 MobiDBLite consensus disorder prediction 95 111 - -
Seca3g05213 622 SMART WRKY_cls 348 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g05213 622 MobiDBLite consensus disorder prediction 212 238 - -
Seca3g05213 622 MobiDBLite consensus disorder prediction 577 622 - -
Seca3g05213 622 Gene3D WRKY domain 333 410 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g05213 622 ProSiteProfiles WRKY domain profile. 343 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g05213 622 MobiDBLite consensus disorder prediction 526 547 - -
Seca3g05213 622 Pfam WRKY DNA -binding domain 350 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g05213 622 MobiDBLite consensus disorder prediction 43 79 - -
Seca3g05213 622 MobiDBLite consensus disorder prediction 284 303 - -
Seca3g05213 622 Coils Coil 168 202 - -
Seca3g05213 622 MobiDBLite consensus disorder prediction 250 325 - -
Seca3g05213 622 MobiDBLite consensus disorder prediction 47 75 - -
Seca3g05213 622 SUPERFAMILY WRKY DNA-binding domain 341 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05213 Seca-Chr3 102499497 102502550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05213 133 591 WRKY Transcription Factor Family AT1G62300 51.767 5.45e-128 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g05213 WRKY 7.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05213 - - gmx:100127384 723.776