Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05182 ATGGAAGAGAATACTAATACCAATTCTGAGGCGCATTTGACTTCTGCCGCTGCTTTTGTGGAGGGTGGAATCCAGGATGCTTGTGATGATGCTTGCAGCATATGCCTTGAAGCCTTCTGTGACAGTGATCCTTCCACGGTGACAAGTTGTAAGCACGAGTTTCATCTTCAGTGCATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGCCCTATGTGTTGGCAAGCTATCAGTCTCAAAGATCCAACGAGCCAGGAATTGCTTGAGGCGGTGGAAAGAGAGAGGAACTTTAGATTCAATCCTTCTAGAAATGCCACAATATTTCATCATCCAACACTGGGAGATTTTGAATTACAACACTTGCCAGTTGGAGCAAATGATGCTGATCTTGAAGAGCGTATAATCCAACACCTAGCTGCTGCTGCAGCCATGGGGCGAGCACGTCATATTGCCAGAAGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGTCCACATTTTTTGGTATTTTCAACTCATCCTAATTCACCTCCCATGGCTCCCGCTTCTTCCTCTCCAACTCAGAGGGGGGATGGTGAACCAGCTCCTGCAATTGCTGTTGCCACTCTATCTCCAACTCCTGCAACTGGAGAAGGATCACCACAGCTGACTTTAGTTCCTCCTGTTCAAGCTGATCAGATTTCAGCTTCAGGATCTGGGTCTACTGCTCTTGCTACTGATCATCAAGGATCATCTTACAACAGCAGGAGATCTCCTAGTCATTCTTCTCCAAGCAGTCAAGATAGAGCAGGGCCATCAGAATTCCAGTCATTTTCAGAATCTCTGAAATCTAAGCTAAATGCTGTGTCAACAAGATACAAAGAGTCGATTTCCAAGAGCACAAAAGGTTGGAAGGAGAGATGGTTCTCTCGTAACACCTCTATGTCTGATCTTGGATCTGAAGTTAAGCGAGAAGTTAATGCAGGAATTGCAACTGTGTCGCGCATGATGGAACGCCTGGAGACTAGAGACAGTAGTAGAAGCAGTAGCAATTCTGCTCCAAGTAATGTAGAGGATGGTTCAGCTCAGGGATCAAATGATCATCAGCATTTAACAAACACTGAAGGGGACGGTCCTTTGAGAGACAATAACACTAAAACATCTTGTGCTGCTGGTGGTTCTAGTTCAAATTAA 1173 0.4569 MEENTNTNSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQAISLKDPTSQELLEAVERERNFRFNPSRNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPASSSPTQRGDGEPAPAIAVATLSPTPATGEGSPQLTLVPPVQADQISASGSGSTALATDHQGSSYNSRRSPSHSSPSSQDRAGPSEFQSFSESLKSKLNAVSTRYKESISKSTKGWKERWFSRNTSMSDLGSEVKREVNAGIATVSRMMERLETRDSSRSSSNSAPSNVEDGSAQGSNDHQHLTNTEGDGPLRDNNTKTSCAAGGSSSN. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05182 390 MobiDBLite consensus disorder prediction 339 390 - -
Seca3g05182 390 ProSiteProfiles Zinc finger RING-type profile. 32 72 IPR001841 -
Seca3g05182 390 SMART ring_2 32 72 IPR001841 -
Seca3g05182 390 MobiDBLite consensus disorder prediction 148 195 - -
Seca3g05182 390 MobiDBLite consensus disorder prediction 226 272 - -
Seca3g05182 390 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 81 - -
Seca3g05182 390 SUPERFAMILY RING/U-box 25 80 - -
Seca3g05182 390 FunFam E3 ubiquitin-protein ligase RHF2A 3 106 - -
Seca3g05182 390 MobiDBLite consensus disorder prediction 332 390 - -
Seca3g05182 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 81 IPR013083 -
Seca3g05182 390 Pfam Ring finger domain 31 72 IPR001841 -
Seca3g05182 390 MobiDBLite consensus disorder prediction 176 190 - -
Seca3g05182 390 CDD RING-H2_RHF2A 19 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05182 Seca-Chr3 101995744 102000649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05182 29 80 C3H Transcription Factor Family AT5G15790 42.308 2.62e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05182 K19043 - gmx:100780275 639.417