Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05175 ATGGGTGAGGAAGGTGAATTTTTTGGTTATGATGAAAAAGAAGATATTGTTGTATCTCATGATGAGCCTAGTAGGTTGCTTGACTTGTCTGGGGAAGAAATAATGTCCCTTGAATTTGGCAGTGAAGAAGAGGCATATAATTTTTATCAATTATATGCTAAGTTTCATGGCTTTGTGGTTAGAAAAGATGACATAACGAAGGATATTAGGGGTAATTTAATTATGCGGCAGTTTGTTTGCAATAGGGAAGGACTAAGAAAAAAGAAGCACTTTATGAGGGTAGATAGGAAGAGAGAGCATAGGCCACTTACCCGTACAAATTGTCAAGCCAAGCTTCGTATACACTACCATGTGAAGAGTTTAAAGTGGAAAGTGGTGTCATTTGAGCAATGTCATAACCATGAGCTTACCCCTTCTAGATTTGTGCACCTACACCCTGCTTACCGGGGTTTAACGGATGCTGATAAGGCTCAGGTTGATAGTTTGCATACATATGGTCTTAGAGGTTGTCATATTATGGGGTACCTAGTGGCTCAAAAGGGTTCTTATTGTCGTGTTGGTTTTACGAAGAAGGATATGTACAACTATCTTGACCGAAAAAATCAAGCAAAGGTGAAGAAAGGGGACGTACGTGCTGGCTTGAGTTACCTTCAAGGCAAGGCTGACAGTGACCCACTTTTATATGGGAAATACTCTACTGGATCTGATGGTAAATTAAAACACCTTTTTTGGGCTGATGGAGTAAGTAGGTATGATTTTCATTGCTTTGGTGATGTTCTTGCGTTTGACACGACATACAAGAAGAACAAGTACAATTATCCTGTTGTAATTTTTTCTGGCTGCAATCATCATTCGCAAACAATTATTTTTGGTTGTGCTTTAGTCTCAGATGAAACAACTGAAACCTATAAGTGGGTTTTAGAAGCTTTCTTGGAAGCAATGGGTAACAAGCAGCCGAATGCAGTAGTAACGGATGGTGATAGTGCAATGCGGGAGGCTATTAAGCATGTTTTTCCAGAATCATGCCATCGCTTGTGTGCATGGCACTTGCATAATAATGCTTGTGAGAATGTCAAATGTTCTCCGTTTTTGGAAGATTTCAAGAGAGCAATGTATTCGAATTTCACCCCGGATGAATTTGAGGAGTTTTGGAAGAAGAAGGTGGTTGAACATGGTCTTGTAGGGAATAAATGGGTGACCAAAACATATGAAAATAAGGGACTGTGGGCGACTGCATATCTTAGGGATAAGTTCTTTGGTCGTATAAGGACAACATCTCAATGTGAATCCATTAATTCTTTTATTAGGTCATATTGTAAGAGGAAAAGTAGTATGGTTGAATTTTTGCACAAGTTTGAGCAGGCAAAGAAGGAGTACAGAAATAATGAGATGATGGCTGAATTTAGGTCTTTATTTTCGGAGCCAGTGCTAACTACATATCTTCGTAGCATTGAGAAAGAGGCTTCAAAAATCTACACTCAAGAGATTTTCAAAGAATTTAAGCAAGAAATTGAAAAGGCCAATGCATTGATTGTTTGTGAAAGATCAGTGTTGGAGGAGAATGTGATGTTCACTCTTAAAAAGTTCTGCACTCCTAGTAAAGTTGTTCATGTTATGTTTTATACTGCAAACACAAGTTTTGTGTGA 1647 0.3849 MGEEGEFFGYDEKEDIVVSHDEPSRLLDLSGEEIMSLEFGSEEEAYNFYQLYAKFHGFVVRKDDITKDIRGNLIMRQFVCNREGLRKKKHFMRVDRKREHRPLTRTNCQAKLRIHYHVKSLKWKVVSFEQCHNHELTPSRFVHLHPAYRGLTDADKAQVDSLHTYGLRGCHIMGYLVAQKGSYCRVGFTKKDMYNYLDRKNQAKVKKGDVRAGLSYLQGKADSDPLLYGKYSTGSDGKLKHLFWADGVSRYDFHCFGDVLAFDTTYKKNKYNYPVVIFSGCNHHSQTIIFGCALVSDETTETYKWVLEAFLEAMGNKQPNAVVTDGDSAMREAIKHVFPESCHRLCAWHLHNNACENVKCSPFLEDFKRAMYSNFTPDEFEEFWKKKVVEHGLVGNKWVTKTYENKGLWATAYLRDKFFGRIRTTSQCESINSFIRSYCKRKSSMVEFLHKFEQAKKEYRNNEMMAEFRSLFSEPVLTTYLRSIEKEASKIYTQEIFKEFKQEIEKANALIVCERSVLEENVMFTLKKFCTPSKVVHVMFYTANTSFV. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05175 548 PANTHER OS01G0519700 PROTEIN 33 508 - -
Seca3g05175 548 Pfam FAR1 DNA-binding domain 47 137 IPR004330 -
Seca3g05175 548 Pfam MULE transposase domain 259 353 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05175 Seca-Chr3 101902947 101904593 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g05175 MULE 2.9e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05175 - - ccaj:109792835 747.658