Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05172 ATGCTATCTGTTCAATATTTCAAACTAAAGAATCTCATGATTGACACAGCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCAAGCAATCCAGATATTAGCCATAGAGAAGCATTCAGCACAGCAGCCAAAAACTGGGCACATTTTCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAGTAAACAAGCAAAGTTGGACCAGGGGGACGTTGGTACTCATAAGTCTAACGGATTCTACTGA 282 0.4078 MLSVQYFKLKNLMIDTAPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDQGDVGTHKSNGFY. 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05172 93 SUPERFAMILY HMG-box 8 62 IPR036910 -
Seca3g05172 93 Pfam YABBY protein 13 69 IPR006780 GO:0007275
Seca3g05172 93 FunFam Axial regulator YABBY 14 84 - -
Seca3g05172 93 CDD HMG-box_SF 23 59 - -
Seca3g05172 93 Gene3D High mobility group box domain 10 66 IPR036910 -
Seca3g05172 93 PANTHER PROTEIN YABBY 6-RELATED 14 78 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05172 Seca-Chr3 101834066 101839118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05172 18 93 C2C2-YABBY Transcription Factor Family AT1G08465 84.416 1.73e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca3g05172 YABBY 8.4e-38 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05172 K25796 - gmx:100785458 151.369