Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05171 ATGGGCGATGATAGCGTTGATTTGACTACACCAACAAAAGGCTTAAATGATCCAATTGATACGTTGGAGGAATGGATTCCAAAGTGTGATGAAGAAATCAAACCTGTAGTTGGTAGAGTCTTTGATACTTTAGAACAAGGAGGGGACTTTTATCAAAGGTATGCACATATTGTTGGTTTTAGTGTACGCAAAGCAACTGAAACAAAAGATAAAAATGGAGAAACAAAGTGGAAATATTTTCTTTGCTCTAAAGAAGGATTCAAATTAGAGAAAAAAGAGGGTGTAACTGAGTTGCTTGTTGATGATAAAAAGTTGCCTAAAACCAAACGAAGAAAACTAACAAGGGAAGGGTGTAATGCAAGGATTGTTTTTAAGAGGACAAAAGAAGGAAAATATGAAGTGATGCGATTTCATGAAGGTCATAAACATGCATTAGTCACACCTAAAAAGAAACAGTTCTTAAGATCTGCAAGGAGCATAAATAATGTTCATAAGAATTTATTACATTGTTATAATAGAGCTAATGTAGGCCCTTCAAAAGTGTATCAATTATTGAAAGAGCAGGTTGGGAGTTATGATAGTATAGGATGCACAAAGAGAGATCTCCAAAATTATTCTAGAGACTTGAAAGACTTAATCAAAGACTCTAATGCACATATGTTTCTTGATAATTTTAGGAGAAAACATAAGATGAACCACTCTTTTTACTATGACTATGAGGTTGATAATGAAGGGAGATTGAAATATGTGTTTTGGGCAGATGGTCTTTGCCAAAAAAATTACTCTTTGTTTGGTGATGTCATTTCATTTGATACAACATACAATACAAATAAATATTGTATGATTTTTGCACCATTCACTGGCATAAATCATCATAGGCAGAGCATAACTTTTGGGGCTGCCTTCCTAGCAGATGAGAAAATTGAATCATTTGAGTGGTTGTTTGAAACATTTTTGAAAGCAATGGGAGGGCATAAACCTATTGTGATTATAACAGACCAGGACCCAGCCATGAAAATTGCAATTGAGAAGGTCTTCATGGGTTCTTCTCATAGATTTTGCATGTGGCACATACTGAAAAAACTTTCAGAGAAGGTGGGTGTTTCCTTGAATTCCAATGCTGATTTTAACATTCGATTTAAGACTTGTGTTTGGAATTCAGAGTCTCCAGATGAATTTGAATTGACATGGAAAACTATCATTACTGATTTCAAGTTAGAAGAAAATGGTTGGCTTTCACAAATGTATGACATGCGAAGTATGTGGATACCAGCTTATTTCAAAAGTATTTTTCTAGCTGGAATTTTGAGAACAACCTCAAGATCTGAGAGTGAAAATTCCTTCTTTGGTAATTACTTGAATAAGAACCTTAGTTTGGTGGAGTTTTGGATGAGATTTGATTCTGCACTAGAAGCACAGAGGCATAATGAATTACTTGCAGATAATGATACACTTCAATCTATGCCCGAATTGAAGCTGCATAAGGATATAGAGAAGCATGGCAGAGAAGTTTACACTCATCAAAATTTTTACAAATTTCAAGGTGAGTTATGGAGTGCATGTGTGGATTGTGGGGTTGAAGAAACAAAAGAGGATAATGGGCAATTATTAATTTTTATACTTGAGCAGCTTATGGTTAATGGAAACAAAGTGAGCAAACATCGGAAAGTTGTTTATAATCCTTCCAATCATATTGCACATTGTTCATGTAAAATGTTTGAATCTGAAGGCATGCCATGTCGACATATCCTTTTTGTATTAAAGGGTAAAGGCTTGAGTGAAATTCTAAGTTATTACATTATTAATAGATGGACCAAATTGGCAACTAGTACTCCAATTTTTTATTATGATGGCAATGTATTGGAGGCATGTTCCAAATTGTTGACTAAGATGAAAGGTGATGTTGGAGCAAGCAAATTGAATGAATTAGAGTCATTTGTTGGCTCCACTGTACCAACAAATGTTGACATTCTTCCTCCTCAACCTTCAAATACCAAAGGAAGTGGAAAACGGATCAAGGGGGAAAGGAGAAGGCAATGGAGCAACAACAAAAAAGAACAAGACTTTGTAAAACTTGCCGACAATTTTCATATCATGATAGTCGTATTGTCCCACAAAATCCTCTTCCTAATTTTTGGTAAGATATTTTGTTAA 2154 0.3477 MGDDSVDLTTPTKGLNDPIDTLEEWIPKCDEEIKPVVGRVFDTLEQGGDFYQRYAHIVGFSVRKATETKDKNGETKWKYFLCSKEGFKLEKKEGVTELLVDDKKLPKTKRRKLTREGCNARIVFKRTKEGKYEVMRFHEGHKHALVTPKKKQFLRSARSINNVHKNLLHCYNRANVGPSKVYQLLKEQVGSYDSIGCTKRDLQNYSRDLKDLIKDSNAHMFLDNFRRKHKMNHSFYYDYEVDNEGRLKYVFWADGLCQKNYSLFGDVISFDTTYNTNKYCMIFAPFTGINHHRQSITFGAAFLADEKIESFEWLFETFLKAMGGHKPIVIITDQDPAMKIAIEKVFMGSSHRFCMWHILKKLSEKVGVSLNSNADFNIRFKTCVWNSESPDEFELTWKTIITDFKLEENGWLSQMYDMRSMWIPAYFKSIFLAGILRTTSRSESENSFFGNYLNKNLSLVEFWMRFDSALEAQRHNELLADNDTLQSMPELKLHKDIEKHGREVYTHQNFYKFQGELWSACVDCGVEETKEDNGQLLIFILEQLMVNGNKVSKHRKVVYNPSNHIAHCSCKMFESEGMPCRHILFVLKGKGLSEILSYYIINRWTKLATSTPIFYYDGNVLEACSKLLTKMKGDVGASKLNELESFVGSTVPTNVDILPPQPSNTKGSGKRIKGERRRQWSNNKKEQDFVKLADNFHIMIVVLSHKILFLIFGKIFC. 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05171 717 Pfam FAR1 DNA-binding domain 49 146 IPR004330 -
Seca3g05171 717 SMART 26again6 566 593 IPR006564 GO:0008270
Seca3g05171 717 Pfam MULE transposase domain 267 361 IPR018289 -
Seca3g05171 717 Pfam SWIM zinc finger 566 587 IPR007527 GO:0008270
Seca3g05171 717 ProSiteProfiles Zinc finger SWIM-type profile. 555 591 IPR007527 GO:0008270
Seca3g05171 717 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 30 615 IPR031052 GO:0006355
Seca3g05171 717 MobiDBLite consensus disorder prediction 658 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05171 Seca-Chr3 101794430 101796706 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g05171 FAR1 5.5e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05171 - - mtr:112420857 830.476