Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05168 ATGGGATTCGAAGAATACTTGTTTCTTTTCAGTGAACCTCCAGTATGCCATGTCTCTATCAGCTCAAGCAATATTATGTTAGATGAGAACTTCACCGCTAAAGTATCTGACTTTGGCCTTCGTAAATCTGGTGGAAATTCTGTCATGATGCCATATTCTGAAGCCTCGTCCATTTCAGATTGCATGGGGCAGAAAAGTTCCAAGATTATATTCCAACTTGGAGTGCTCATATTGGAACTGGTCACTGGTCAGTCTTCAGAGATGGAAGGTTCTGATTTAATTGAATGGATCCAAGAATCCCGATTTTACAGTTCCATAGATAAGATGATAGACCCTGATCTTGGAAACAGTTATGACTGTACTGAGCTTAAAAGTCTTCTAGGTGTGGCAAAATTATGTATCAAATCATGGGACAAGCCTTCATTTACAACTCCTCAGTTATTTCGGTATCTCCAAAAGAAGATTGATATTCCCCATGACTAG 483 0.3934 MGFEEYLFLFSEPPVCHVSISSSNIMLDENFTAKVSDFGLRKSGGNSVMMPYSEASSISDCMGQKSSKIIFQLGVLILELVTGQSSEMEGSDLIEWIQESRFYSSIDKMIDPDLGNSYDCTELKSLLGVAKLCIKSWDKPSFTTPQLFRYLQKKIDIPHD. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05168 160 PANTHER OS01G0253100 PROTEIN 6 154 - -
Seca3g05168 160 SUPERFAMILY Protein kinase-like (PK-like) 12 125 IPR011009 -
Seca3g05168 160 Gene3D Transferase(Phosphotransferase) domain 1 5 156 - -
Seca3g05168 160 FunFam probable receptor-like protein kinase At1g49730 70 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05168 Seca-Chr3 101734342 101735172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05168 5 159 Receptor kinase-like Gene Family AT3G19300 30.636 3.33e-18 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Seca3g05168 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05168 - - aprc:113853565 265.003