Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05165 ATGGGTGTCTCAGGGAAGTGGATTAGAGCATTGGTTGGTCTAAAGAAATCAGAAAAGTCAAAGTTGAAGGATAAAAATAAGTTTGGCAAGTTTCACCATCAAAGAAAGCATTCCAACGAATTCGATAATGGTCCAAACGAATTGGATAATGATGCTAAACCACCTATTGGAGACAACAATGGCCATACAGACCTTGATGCCCATTATTCTTCTACTTCACAACAAGCACATGATGCTGCACATTATCATCAAATTATGAGGGAGGAATGGGCTGCAATACGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTTCAGGCTCTAGCAAGAGGCCATGCAGTGAGAAAACAAGCAGCAATAACGCTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGGGCAAGGCATGTTCGCATGGCTTTGGAAAAACAAGCAGAAAAACAGAAACATCAGCAACAGCTTCCAAATGAAGCACGAGTTCGAGACATTGAAGAAGGATGGTGTGATAGTGTGGGATCTTCTGAAGAAATTCAGGCTAAAATATTGAAGAGACAAGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTAGCTCATCAGGATTACATAGCATGGTACTTGAAGATGTTATCAAGTGGTACTGAAATCCTACAATGGCAGCCAGGACCAAGACAGCAGGCTGTTTCGTCTGGATTTGAACCAGATAAAAGTAGCTGGGGTTGGAATTGGTTGGAAAGGTGGATGGTTGTCCGTCCTTGGGAGAATCGCTTCGTTGACATTAGTCTGAGGGATGGAGTAACAGTACGTCAGACTGGAGCTATGGATGATAAAAATGGAAATAGACCTCAGTTAAGATCTGCTAACAAGAAACCATTTTCATCAAACATTCATCCAAACCTTACAAGTCACAGAACTGCTCCCACTCTTTCCGATGGCAGTGATTCTTCACCCAGCAAGTCAGCAGGTTTGCTAGAATCATCAACCACACAGCCTGTTAAGCCAGATTCTAAGGTAAATGTTGAACATCGTGTTGAAGAAGTTAAAGCAAAACCCAGAAATGGGTCAAGATCTTACAGTAATCCAAAGGAGAGAACATCACAGGCAGATAAGCAGGCCAAAAGACGATTATCGCTGCCTAACAGTGGGGGTGGTCCTGGGTCTGAAACAGCCAGACATCTTATTAGAACAAATGTGAAAGGGACACCAAGCATGCAAAGGCCTAACAGGGATAAGCCCAAGTTCAATGGGAGAGGGGATGTGAATCTTACAAAACCAGTTCAACAACCCGGGGACATGTAG 1350 0.4393 MGVSGKWIRALVGLKKSEKSKLKDKNKFGKFHHQRKHSNEFDNGPNELDNDAKPPIGDNNGHTDLDAHYSSTSQQAHDAAHYHQIMREEWAAIRIQTAFRGFLARRALRALKGLVRLQALARGHAVRKQAAITLRCMQALVRVQARVRARHVRMALEKQAEKQKHQQQLPNEARVRDIEEGWCDSVGSSEEIQAKILKRQEAAAKRERAMAYALAHQDYIAWYLKMLSSGTEILQWQPGPRQQAVSSGFEPDKSSWGWNWLERWMVVRPWENRFVDISLRDGVTVRQTGAMDDKNGNRPQLRSANKKPFSSNIHPNLTSHRTAPTLSDGSDSSPSKSAGLLESSTTQPVKPDSKVNVEHRVEEVKAKPRNGSRSYSNPKERTSQADKQAKRRLSLPNSGGGPGSETARHLIRTNVKGTPSMQRPNRDKPKFNGRGDVNLTKPVQQPGDM. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05165 449 MobiDBLite consensus disorder prediction 301 352 - -
Seca3g05165 449 Gene3D - 89 130 - -
Seca3g05165 449 MobiDBLite consensus disorder prediction 23 76 - -
Seca3g05165 449 FunFam IQ-domain 11 87 138 - -
Seca3g05165 449 SMART iq_5 87 109 IPR000048 GO:0005515
Seca3g05165 449 MobiDBLite consensus disorder prediction 353 369 - -
Seca3g05165 449 ProSiteProfiles IQ motif profile. 88 116 IPR000048 GO:0005515
Seca3g05165 449 PANTHER IQ-DOMAIN 5-RELATED 1 402 - -
Seca3g05165 449 ProSiteProfiles IQ motif profile. 112 139 IPR000048 GO:0005515
Seca3g05165 449 Pfam IQ calmodulin-binding motif 90 109 IPR000048 GO:0005515
Seca3g05165 449 MobiDBLite consensus disorder prediction 288 449 - -
Seca3g05165 449 ProSiteProfiles IQ motif profile. 137 165 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05165 Seca-Chr3 101669925 101677460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05165 1 434 IQD Protein Family AT3G22190 49.778 4.52e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05165 - - gmx:100781346 542.347