Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05152 ATGCCAGAAGAACAATCAGTTATAGGAAAAAGTCAGATATATTATGATAAATGCAGTGGCGAGACATTAATATGCAGTGACAATGATGAGGAACCAACAAAAGATGACAAAGTTAAACATGATTTTTCCAGGAGTGAAGATCGCATTTTGTGGATGACATTTGAGGAACATGGGTTCACTAAGGAAGTGTTGAATATTGTTTCAAAGTTTGTCAATGGTACCGTTTCAGAAATTCAAGAGAGGTATAAATATCTTAAGGAAAAGAACAAGAGGAGGTTGGACCAGCATTCTAAAGATTCTGGAGAACAGGAATCTCTTATTGGCATATTTTTGGATAAAAGCTTGAATGATGCTTTGGATACTTTTAATAGACTTTTTTGCCGCCAGTGCATTCAAATCTTTGATTGTCCCCTGCATGGCCGTTCAAAACCTATATCTCTTAGTGAAAAGCAGAAAGTATGGTCTGAACCTGAAGGTGACAGGAAACCGTGCAATAATCACTGTTACCTTCAGACTTGCATGGAAGTAGCTAGCTACATGTATGTTGCAAAAGTATCAATGCCTAACAAATCCATACTAAGTTCAGTTAAGGAAAAAAATGGAAAAATTGATGCAGAGTGCACAGACCTAGAGATGGAATCAGGGTCACGATTGCTACGGAAAAGGCGCAAAACTAGGAAGTTGAAATTTTCTTTCAAGGAATTTGTGGAAAGCAATGTTCTTGTCTTCAAAATGGATCCTGCTGTGAAAAATATTGTGGATGTTCAGAGCTATGTAGAAATCGGTTCAGAGGATGTTATTGTGCTAAGAGTCAATGCAGAAGTCGACAATGTCCATGCTTTGCAGCAAACCGAGAATGTGACCCAGACTTGTGGCGGTGGTTCATTAGGAGAGCCACCTCGACGTGGAGATGGTCAATATGAAAATATGAGGATTCTTTTAAGGCAAAAGCAGAGGATTATTTTGGCTAAGTCTGATGTTGCAGGATGGGGAGCCTTCTTAAAGAACCCATCTAACAAAAATGATTACCTGGGAGAGTACACGGGTGAACTGATATCTCAATCAGAAGCAGACAAGCGTGGGAAAATTTTTGATCGTGCAAACTTTTCTTTCCATTTTAACTTGAATGATCAAGCAAGTGTTTGTTTAATGTATGTCATTGATGCTTATCGCAAAGGAGAAAAGTTGAAATTTGCTAACCACTTAAAAAAACCCAACTGTTATGCAAAGATTATGTTTGTTGGTGGGGATCATCGAGTAGGCATATTTGCCAAGAAACGCATTGAAGCTGGTGAGGAGCTTTTCTACGATTATTGCTACAGGCCAGAGCAAGCACCAACGTGGTTTTAA 1350 0.3881 MPEEQSVIGKSQIYYDKCSGETLICSDNDEEPTKDDKVKHDFSRSEDRILWMTFEEHGFTKEVLNIVSKFVNGTVSEIQERYKYLKEKNKRRLDQHSKDSGEQESLIGIFLDKSLNDALDTFNRLFCRQCIQIFDCPLHGRSKPISLSEKQKVWSEPEGDRKPCNNHCYLQTCMEVASYMYVAKVSMPNKSILSSVKEKNGKIDAECTDLEMESGSRLLRKRRKTRKLKFSFKEFVESNVLVFKMDPAVKNIVDVQSYVEIGSEDVIVLRVNAEVDNVHALQQTENVTQTCGGGSLGEPPRRGDGQYENMRILLRQKQRIILAKSDVAGWGAFLKNPSNKNDYLGEYTGELISQSEADKRGKIFDRANFSFHFNLNDQASVCLMYVIDAYRKGEKLKFANHLKKPNCYAKIMFVGGDHRVGIFAKKRIEAGEELFYDYCYRPEQAPTWF. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05152 449 Pfam SET domain 330 438 IPR001214 GO:0005515
Seca3g05152 449 Gene3D SET domain 264 440 IPR046341 -
Seca3g05152 449 SUPERFAMILY SET domain 307 441 IPR046341 -
Seca3g05152 449 ProSiteProfiles SET domain profile. 318 439 IPR001214 GO:0005515
Seca3g05152 449 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 287 443 IPR045318 GO:0006338|GO:0042054
Seca3g05152 449 CDD SET_EZH 318 440 - -
Seca3g05152 449 SMART set_7 318 445 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05152 Seca-Chr3 101438743 101442410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05152 317 442 C2H2 Transcription Factor Family AT2G23740 28.467 6.69e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca3g05152 SET 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05152 - K11430 cam:101494145 373.629