Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05151 ATGGATGAAATTGATGTCCCTTCTCATTTCCTCTGCCCCATTTCCCTGCAACTAATGAGAGACCCTGTCACAGTTTGCACAGGAATCACTTATGACAGAGAAAACATAGAGAGATGGTTATTTTCATGCAAGAACAAAACTTGCCCTGTTACCAAACAACCCCTTTTAGACACTGATCTTATTACCCCAAATCACACTCTACGTAGATTGATCCAATCTTGGTGCACCCTTAATGCTTCTCTTGGAGTTGAACGCATTCCAACTCCAAAGCCACCTATTGACAGAACCCAGATTGTGAAACTCCTCTCTGAAGCAAAGAGGTTCCCAGATAAGCAACTCAAATGCCTTAGAAGGCTTAGATCAATTGCTTTTGAAGGTGAAAGGAACAAAAACTGTTTGGAATCTGCAGGGGCAATAGATTTCTTGGCTTCAACAATGAAGAATAACAGCATTAACACACAACAAGATTCAGCTGTTCTGAGTGAAGCAGCAATTGAAGTTTTGTTTCATCTAAATCCTTCAGAGGCTCAGCTTAAGAATCTGGTAAACAATGAGAGCATTCAATTTATTGAGTCTTTGTTTCATGTGTTGAGGCTTGGGAACTACCAATCTAGAGCTTATGCTACTATGCTATTGAAGTCAGCATTTGGGGTAGCTGATCCAATCCAATTGATAAGTGTGAAAACAATTCTGTTTGAGGAAATAATGAGAGTGCTTCGTGATCAGATTTCACAGCAGGCTTCAAAGGCTGCATTGAAGCTTATTGTGGAGCTTTGTCCATGGGGAAGAAACAGAATCAAAGCTGTTGAGGGTGGTGTAGTTTCAGTCCTAATTGAGCTTCTTCTTGATACCTCAGAGAGAAGAGCATGTGAACTTATGTTAATAGCTTTGGATCAACTCTGTGGTTGTGCAGAAGGGAGGGCAGAGTTGTTGAATCATGGGGCAGGAGTGGCTATTGTGTCAAAGAAAATTCTAAGGATTTCTCATGCAGCAAGTGATAGAGGGGTTAGAATTTTGGCCTCAATTTGTAGGTATTCTGCTAATTCTAGAGTAGTTCATGAAATGTTGCAAGTTGGGGCTGTGTCCAAGTTATGTTTGGTGCTTCAAGTGGATAGCAGTTTCAAGACAAAGGAAAGGGCAAAGGAGATACTCAAATTGCACTCTGCTGTTTGGAAGAATTCACCATGTATTCCTGTTCCTTTGTTATCATCCTATCCATGA 1221 0.4079 MDEIDVPSHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNKTCPVTKQPLLDTDLITPNHTLRRLIQSWCTLNASLGVERIPTPKPPIDRTQIVKLLSEAKRFPDKQLKCLRRLRSIAFEGERNKNCLESAGAIDFLASTMKNNSINTQQDSAVLSEAAIEVLFHLNPSEAQLKNLVNNESIQFIESLFHVLRLGNYQSRAYATMLLKSAFGVADPIQLISVKTILFEEIMRVLRDQISQQASKAALKLIVELCPWGRNRIKAVEGGVVSVLIELLLDTSERRACELMLIALDQLCGCAEGRAELLNHGAGVAIVSKKILRISHAASDRGVRILASICRYSANSRVVHEMLQVGAVSKLCLVLQVDSSFKTKERAKEILKLHSAVWKNSPCIPVPLLSSYP. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05151 406 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Seca3g05151 406 SUPERFAMILY RING/U-box 3 78 - -
Seca3g05151 406 CDD RING-Ubox_PUB 7 60 IPR045210 -
Seca3g05151 406 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Seca3g05151 406 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Seca3g05151 406 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Seca3g05151 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Seca3g05151 406 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Seca3g05151 406 Coils Coil 402 406 - -
Seca3g05151 406 Gene3D - 93 394 IPR011989 -
Seca3g05151 406 SUPERFAMILY ARM repeat 98 384 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05151 Seca-Chr3 101403518 101404738 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05151 2 406 U-box Gene Family AT2G35930 55.257 3.25e-163 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05151 - - gmx:100778012 694.886