Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05150 ATGGCTGAAATTGAAATCCCTCAATTTTTCGTTTGTCCAATTTCGCTTCAGATCATGAAGGACCCTGTGACAACAGTGACAGGCATAACATACGACAGAGAAAGCATTGAACACTGGTTGCTAACTGCAAAAAACTGCACTTGCCCTGTTACCAAACAACCATTACCAAGAAGCACAGAGTTTCTTACACCAAACCACACACTTCGAAGGCTAATCCAAGCATGGTGTTCAACAAACTCAGCAAATGGCGTTGACCGTATTCCAACCCCGAAATCCCCATTAGACAAAGCTCACGTTGAGAAACTCGTGAAGGATCTTGATTCTCCACGCTGTTTTCAATTCACACTTGAGAAATTACATGCTCTTGCAACAGAGAGTGAGAGGAACAGAAGGTGCATGGCTGAATCAGGAGTAGCAAAAGCCATGATTCGTTTGATTACAAAGATTTTCAAGCAAGGTAACACAACTTTCCTTGAAGAATCTCTGAGAATCCTTCGATTACTCTGGAGTGATAATGTTAACATGAAACGCTTAATTGATGAAAGCTTTGACTTTTTCAACTCGTTGACTTGGATTTTGCAACTTCATCACAACGATGTCAAGGTGATAAATGAAGCAATGCCTATAATGAAATTGGCAATTGAAGTGAAAGATTCAACCTTTTTGGGTAACTTAAAGGTTGAATTTTTCAGGGGAATTATCATGAGTGTACTAAAAAATAGAGCAATTTCTCAGCAGGCTATTAAATCTGCATTGCATGTACTCATAGAAACATGTCCTTTGGGTAGAAATAGGATGAAGATTGTGGAAGCAAGTGCAGTAACAGAACTCATTGAGCTTGCACTTGAGAAATTAGAAAAGAGTGTAACAGAGCTTATATTTATACTTTTGGCACATCTCTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTAAAGCATGCAGGGGGTATAGCAGTGCTTTCTAAGAGAACATTAAGGGTTTCTCCAACAACAGATGATAGAGCTCTTCATGTGTTTTCATTGATTTCAAAATACTCAGCATCTAATGAGGTTGTTCAAGAGATGTTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAAGAAAAAGCAAGAGGTATACTTAGGTTACACTCAAGAGCATGGAATAATTCTCCTTGCATTCAAGTGTATTTGTTAACAAGACACCAAAGGTGA 1224 0.3905 MAEIEIPQFFVCPISLQIMKDPVTTVTGITYDRESIEHWLLTAKNCTCPVTKQPLPRSTEFLTPNHTLRRLIQAWCSTNSANGVDRIPTPKSPLDKAHVEKLVKDLDSPRCFQFTLEKLHALATESERNRRCMAESGVAKAMIRLITKIFKQGNTTFLEESLRILRLLWSDNVNMKRLIDESFDFFNSLTWILQLHHNDVKVINEAMPIMKLAIEVKDSTFLGNLKVEFFRGIIMSVLKNRAISQQAIKSALHVLIETCPLGRNRMKIVEASAVTELIELALEKLEKSVTELIFILLAHLCSCADGREQFLKHAGGIAVLSKRTLRVSPTTDDRALHVFSLISKYSASNEVVQEMLRVGAVSKLCMVMQADCASYLKEKARGILRLHSRAWNNSPCIQVYLLTRHQR. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05150 407 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Seca3g05150 407 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Seca3g05150 407 Gene3D - 99 390 IPR011989 -
Seca3g05150 407 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Seca3g05150 407 SUPERFAMILY ARM repeat 95 380 IPR016024 -
Seca3g05150 407 CDD RING-Ubox_PUB 7 59 IPR045210 -
Seca3g05150 407 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Seca3g05150 407 SUPERFAMILY RING/U-box 4 85 - -
Seca3g05150 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05150 Seca-Chr3 101386507 101387730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05150 3 397 U-box Gene Family AT2G35930 41.895 7.94e-104 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05150 - - gmx:100778547 634.409