Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05148 ATGGAATTGCAAAACCGATTTTATCACATTAATATTAATGCTTGGTTGATAGTGGCAGATATAGAGATGGTGAAAGAAATCATCTTGAACAACTCTTTGGTTCTAGGGAAGCCTTCTTATCTTTCCAAAGATATGGGGCCACTCTTAGGCCGTGGTATATTGTCATCAAGTGGGTTGATTTGGGCTCATCAGAGGAATATAATTGCCCCTGAACTATACCTAGATAAGGTGAAGGCAATCGTTAATCTAATAGTTATCTCCACAAATATAACACTAAAATCTTGGGAGACTAAACTAGAAAGTGAGGGAGTAGTTTCAGAGATTAAAGTTGATGATGATCTAAGAGGCTTGTCAGCTGACATAATTTCCAGAGCTTGTTTTGGGAGCAATTATATTGAAGGAAAAGAAATATTCACAAAGCTTAGAGATCTTCAAAAACTCCTTTCTAAGATATATGCTGGAATTCCAGGCTTTAGGGTAGAGCAGAGAAAGTTTTTATTTCATCCCAGAAAATATCCCCCCATATTTGTGGTTAGTGTTAACGAAAAGGAAAGAGCGTGCCCTCTACATCTTGCAGAAGCTCTAGAATACTGCACAAGCAAAGGGCATGCCCTCTATCATGACCTTAATACATTGGGGCATTTGGCTCTGGAAAAAGCAAATCAGAGCTTGCTAGACTATCTTTGTTCAACCCCTCTTTGTCTCAAGTTCAGAATTTTCTTCAGCAAAAGCCCCAAGGTTGAGAAGATTTTTGGCCCAGGAAACCAATATGTCACAGCTGCAAAAATGATTCTGCAAAATAGTGAAGCTATGGATGCAATTGACATGCCAGCTGGTCTATCTGAAGTTTTGGTCATTGCAGATAAGCATGCAATTCCTCGTCATGTAGCTTCCGATTTGCTTTCCCAGGTTTATTGA 918 0.3911 MELQNRFYHININAWLIVADIEMVKEIILNNSLVLGKPSYLSKDMGPLLGRGILSSSGLIWAHQRNIIAPELYLDKVKAIVNLIVISTNITLKSWETKLESEGVVSEIKVDDDLRGLSADIISRACFGSNYIEGKEIFTKLRDLQKLLSKIYAGIPGFRVEQRKFLFHPRKYPPIFVVSVNEKERACPLHLAEALEYCTSKGHALYHDLNTLGHLALEKANQSLLDYLCSTPLCLKFRIFFSKSPKVEKIFGPGNQYVTAAKMILQNSEAMDAIDMPAGLSEVLVIADKHAIPRHVASDLLSQVY. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05148 305 Gene3D Cytochrome P450 4 195 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g05148 305 Gene3D Nitrogenase molybdenum iron protein domain 241 281 - -
Seca3g05148 305 Pfam Cytochrome P450 16 148 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g05148 305 PANTHER CYTOCHROME P450 FAMILY MEMBER 13 160 - -
Seca3g05148 305 SUPERFAMILY Cytochrome P450 13 153 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g05148 305 PRINTS Histidinol dehydrogenase signature 242 267 IPR012131 GO:0016616|GO:0046872|GO:0051287
Seca3g05148 305 PRINTS Histidinol dehydrogenase signature 296 305 IPR012131 GO:0016616|GO:0046872|GO:0051287
Seca3g05148 305 PRINTS Histidinol dehydrogenase signature 274 295 IPR012131 GO:0016616|GO:0046872|GO:0051287
Seca3g05148 305 SUPERFAMILY ALDH-like 243 303 IPR016161 GO:0016491
Seca3g05148 305 Pfam Histidinol dehydrogenase 244 303 IPR012131 GO:0016616|GO:0046872|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05148 Seca-Chr3 101359397 101364201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05148 8 187 Cytochrome P450 AT5G24910 42.564 4.29e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05148 K24544 - gmx:100780335 231.876