Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05143 ATGGCGACGTACTTTCATGGCAGCACAACTTCAGAAATCAACTCTTCTTCTTCTGATGGCTTGCAGACACTTCACCTTATGAACCCAACCTACGTACCCTACCCTGACGCGCCTCACCACCCAACTCCCAACATGATCCTCCTCAATCACCCCAACGCGCTCAACCTCGCTAGTTTCCCCCACGCGCCGCCATTTCAACCATCTGCTTCCCCTAACCACCACCACCACCAACAACACCCCGTGATTCACGGGGTAACTAGCGTCTTCGGATCCACCGACTCCGACGACCACACACGACCACCGTCTTCCTCCTTGTTCGGCCACCACGACATCTCTGCAACCACCACCTTCCACGGCTTCTCTCCCGCCGCCGCCGCGCCTCGTGTCCACTATAACTTGTGGGGAACCGTGATCAATCAACCGTCGTCCACGGCAGCGACAACCGCACCTACCAGTGCGGTTGATGGCGGTTACCGGCGGCCAAGCCAGCAGGGGTTGTCGCTGAGCCTTTCCTCGGAACAAACCGCTTATAGATCAATTGAAGTTCCGGGACATGCTCCGATGGCCGGAATTGGGAACTCTCCGACGTCGGTATCGAACGGAGTTTCAGGCGTGATTTTGGGGTCGAAGTATTTGAAGGCAGCACAGGAGGTTCTAGATGAAGTTGTTAACGTGGAGAAGGGAATCTACAGAGATGAAAAATTCGCTGAAGGGGGAAATAATAAAGATAAGATGAGAGCCAATAGAGAATCGACACCTGGAGGTGGTGAAGGTTCAAGTGGTGCAGGGAAACAAGTGGCTGAACTCAGTACGGCTCAGAGACAAGAACTTCAGATGAAGAAGTCCAAGCTTGTCAGCATGCTCGATGAGGAAAGGAAAGGGAACGAACTGGTAGAGCAGAGGTACAGGCAATATCACCACCAAATGCAGATTGTGATATCATCGTTTGAACAAGCAGCGGGTTTTGGGGCGGCAAAATCTTACACAGCCATTGCCTTAAAGACAATCTCAAAGCAATTTCGATGTCTTAAAGATGCAATCTGTGGACAAATCAGAGCGACGAGCAAGACATTGGGTGAAGATGATTGCTTAGGTGTTAAAGTAGAAGGGTCGAGGCTAAGGTATGTGGACCACCATCTAAGGCAACAACGGGCATTGCAGCAGTTAGGAATGATCCAACCTAATGCTTGGAGGCCCCAGAGAGGCTTGCCTGAACGAGCTGTTTCCGTTCTTCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCCTATCCTAAGGACTCTGATAAAGTTATGCTTGCTAAACAAACGGGACTTGCTAGGAGCCAGGTATCAAACTGGTTTATTAATGCCCGAGTTCGGCTGTGGAAACCAATGGTTGAAGAAATGTACATGGAAGAAGTGAAGGAGCAGGAACGTGTTAATGGTTTAGATAACACCGCATCAAAAGAATCGGGCAAGGAGCCAAATGTTACAACCGAATCAGGTGAAATCAAACTTCCCCAATCAGAGCAACAAACCTTCAACAACCGAAACACTACTTCACTAACTGAGATCTCAACAAACCATCTTGTACCATCATCATCTGACATCCAAATTATGAGTCCAAACAAGCCAAGAAGTTCGGAAATGCAGAACTCTCCAAGTACCATCCTTTCAGTGGACATGGAAATGAAGCATGGAGATCAAACCACTAGAGAAGCCAATAACAACACAAAGTTTAGCATTGACCAAAGGCACCATCACCACCACAAAGATGGCTACCCTTTAATGACTGGCAATGCAAACCATGGTGGGGGTTTTGGGGCTTTCTCCATGGAAGACATTGGAAACAGGTTTAATGTCACTGAACAATTGGCTTCCACTGGGTTCCATGGGAATGGTGTTTCTCTCACTCTAGGACTTCCTCACAATGAGAACCTCCCTATCTCAGCAGGAACTCAACATGGATTTCTCTCACATAATATGCATTTAGGAAGGAGACTTGAGATTGAAACCAATGGAAATGAGTTTTGTGCCATCAACACTGCTCCTCCTTCTTCCCACTCAGGAAACAGTTATGAGAGTATTGACATTCAAAACAGAAAGAGGTTTGCTGCCCAATTATTGCCAGATTTTGTTGCCTGA 2124 0.4802 MATYFHGSTTSEINSSSSDGLQTLHLMNPTYVPYPDAPHHPTPNMILLNHPNALNLASFPHAPPFQPSASPNHHHHQQHPVIHGVTSVFGSTDSDDHTRPPSSSLFGHHDISATTTFHGFSPAAAAPRVHYNLWGTVINQPSSTAATTAPTSAVDGGYRRPSQQGLSLSLSSEQTAYRSIEVPGHAPMAGIGNSPTSVSNGVSGVILGSKYLKAAQEVLDEVVNVEKGIYRDEKFAEGGNNKDKMRANRESTPGGGEGSSGAGKQVAELSTAQRQELQMKKSKLVSMLDEERKGNELVEQRYRQYHHQMQIVISSFEQAAGFGAAKSYTAIALKTISKQFRCLKDAICGQIRATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYMEEVKEQERVNGLDNTASKESGKEPNVTTESGEIKLPQSEQQTFNNRNTTSLTEISTNHLVPSSSDIQIMSPNKPRSSEMQNSPSTILSVDMEMKHGDQTTREANNNTKFSIDQRHHHHHKDGYPLMTGNANHGGGFGAFSMEDIGNRFNVTEQLASTGFHGNGVSLTLGLPHNENLPISAGTQHGFLSHNMHLGRRLEIETNGNEFCAINTAPPSSHSGNSYESIDIQNRKRFAAQLLPDFVA. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05143 707 Pfam Associated with HOX 205 347 IPR006563 -
Seca3g05143 707 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g05143 707 MobiDBLite consensus disorder prediction 473 508 - -
Seca3g05143 707 SMART HOX_1 397 461 IPR001356 GO:0003677
Seca3g05143 707 MobiDBLite consensus disorder prediction 86 107 - -
Seca3g05143 707 SMART prehox3 200 349 IPR006563 -
Seca3g05143 707 Gene3D - 400 477 - -
Seca3g05143 707 MobiDBLite consensus disorder prediction 236 267 - -
Seca3g05143 707 MobiDBLite consensus disorder prediction 143 171 - -
Seca3g05143 707 MobiDBLite consensus disorder prediction 477 508 - -
Seca3g05143 707 MobiDBLite consensus disorder prediction 236 250 - -
Seca3g05143 707 CDD homeodomain 397 458 IPR001356 GO:0003677
Seca3g05143 707 FunFam BEL1-like homeodomain protein 9 400 462 - -
Seca3g05143 707 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
Seca3g05143 707 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
Seca3g05143 707 SUPERFAMILY Homeodomain-like 398 464 IPR009057 -
Seca3g05143 707 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05143 Seca-Chr3 101133943 101139141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05143 95 707 Homeobox Transcription Factor Family AT2G35940 45.414 1.14e-134 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca3g05143 POX 9e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05143 - - gmx:100779075 907.516